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Method for immobilizing nucleic acids on a support

一种核酸、载体的技术，应用在生物化学设备和方法、微生物的测定/检验等方向，能够解决危害应用、影响分子与互补序列杂交的能力、核酸分子损伤等问题

Active Publication Date: 2011-08-31
KONINK PHILIPS ELECTRONICS NV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0010] However, irradiation of nucleic acids with short-wavelength ultraviolet light around 254 nm usually causes severe damage to the nucleic acid molecules, which can affect the ability of the molecules to hybridize to complementary sequences and can thus jeopardize their application in microarray systems

Method used

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  • Method for immobilizing nucleic acids on a support
  • Method for immobilizing nucleic acids on a support
  • Method for immobilizing nucleic acids on a support

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0136] Example 1 - Test of Immobilization Efficiency at Different Wavelengths

[0137] The immobilization efficiency of different immobilization methods was tested on Nytran SPC nylon membrane. Specifically, light at a wavelength of 254 nm, non-ultraviolet light, and light at a wavelength of 365 nm were used for exposure of nucleic acid molecules in exposure periods of 5 seconds or 20 seconds of exposure. As nucleic acid molecules, different oligonucleotides were used, comprising 16 nucleotides of only one base (ie 16A, 16C, 16G, 16T, 16U), each 16-mer labeled with Atto655 dye.

[0138] The parameter tested was the nucleic acid immobilization efficiency or recovery, i.e. the ratio between immobilized and precipitated oligonucleotides, corrected for the loss of fluorophore density during UV application. After UV application, samples were washed to remove unbound material. As washing buffer, 5x SSC containing 0.1% SDS and 0.1 mg / ml herring sperm DNA was used. Washing / blocking...

Embodiment 2

[0142] Example 2 - Recovery Test and Sensitivity Test of T-Tail-Containing Nucleic Acids

[0143] Sensitivity, i.e. the amount of analyte captured per unit time, was tested in a real-time hybridization assay. Nytran N or Nytran SPC nylon films were used for experiments.

[0144] The assay is performed using capture oligonucleotides (i.e. immobilized precipitated nucleic acid molecules) that either do not contain a T tail or contain a T16 tail, a stretch of 16 thymines. These experiments were performed in a flow cell, which is a device in which a membrane is clamped and hybridization fluid is pumped through the membrane. Figure 3A , the number of cycles is depicted on the x-axis, which is equal to time (1 cycle takes 1 minute). Hybridization is accomplished with complementary DNA. The hybridization buffer is 5×SSC, 0.1% SDS, 0.1mg / ml herring sperm DNA. The temperature was set at 50°C.

[0145] As can be obtained from Figure 3A, oligonucleotides containing the T16 tail sho...

Embodiment 3

[0148] Example 3—Specificity Test of Immobilized Nucleic Acids

[0149] The specificity of the immobilized nucleic acids, ie the ability to distinguish between matched and unmatched targets, was tested in a binding assay.

[0150] The assay is performed with immobilized nucleic acids (capture probes) containing 0, 4 or 16 Ts. Different capture probes were used, including perfect matches, single mismatches ((AG) mutations) and double mismatches ((AAGG) mutations). PCR products were used for hybridization. Hybridization is performed in a flow cell, which is a device in which a membrane is clamped and hybridization fluid is pumped through the membrane. The temperature was set at 50°C. Hybridization was performed for 1 hour. After hybridization, the buffer was changed to 2 × SSC, and the temperature was increased at 1°C / min to generate melting curves and assess specificity.

[0151] Figure 4 depicts the debinding curves for complementary, single-mismatched and double-mismatch...

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Abstract

The present invention relates to a method for immobilizing nucleic acids on a support, comprising the provision of a nucleic acid with a stretch of nucleotides of only one basetype and the immobilization of said nucleic acid on a support by crosslinking by light, wherein said crosslinking by light is performed at a wavelength of about 300-500 nm, preferably at a wavelength of 365 nm. The present invention further relates to a method for the analysis of nucleic acids immobilized according to the invention, which comprises the hybridization of the immobilized nucleic acid with complementary and mismatch segments. Furthermore, the present invention relates to immobilized nucleic acids obtainable by the method of the invention, the use of accordingly immobilized nucleic acids for the production of nucleic acid arrays and a diagnostic kit, comprising an array of nucleic acids which are immobilized according to the present invention.

Description

technical field [0001] The present invention relates to a method for immobilizing a nucleic acid on a carrier, which comprises providing a nucleic acid with a nucleotide stretch of only one base type and immobilizing the nucleic acid on a carrier by photocrosslinking, wherein the photocrosslinking It is performed at a wavelength of about 300-500 nm, preferably at a wavelength of 365 nm. [0002] The present invention further relates to a method for analyzing immobilized nucleic acids according to the present invention, which comprises immobilizing nucleic acids with probes comprising complementary fragments, probes comprising single mismatch fragments, probes comprising double mismatch fragments and / or comprising carrying Probe hybridization of higher numbers of mismatched fragments and subsequent determination of melting points for hybrids formed from immobilized nucleic acids and hybridization probes. [0003] Furthermore, the present invention relates to the immobilized nu...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68
CPCC12Q1/6837C12Q2525/173
Inventor A.皮里克H.R.斯塔珀特
Owner KONINK PHILIPS ELECTRONICS NV
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