Method and device for processing file needing mutation detection

A technology of mutation detection and processing method, applied in the field of processing files to be detected by mutation, can solve the problems of complex operation, no solution proposed, single function of mutation detection method, etc., and achieve the effect of simplifying design and operation

Active Publication Date: 2014-03-05
BEIJING NOVOGENE TECH CO LTD
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0005] Aiming at the problems of single function and complex operation of the mutation detection method for complex types of comparison data in the related art, no effective solution has

Method used

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  • Method and device for processing file needing mutation detection
  • Method and device for processing file needing mutation detection
  • Method and device for processing file needing mutation detection

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Experimental program
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Example Embodiment

[0015] Example one:

[0016] In its most basic configuration, figure 1 Is a flowchart of a method for processing a file to be detected for mutation according to an embodiment of the present invention; figure 2 It is a detailed flowchart of a method for processing a file to be detected for mutation according to an embodiment of the present invention.

[0017] Such as figure 1 As shown, the processing method of the file to be detected for mutation includes the following steps:

[0018] Step S10, obtaining comparison data according to the file to be detected for mutation.

[0019] Step S30: Perform preprocessing and / or correction processing on the data to obtain comparison data for mutation detection. Specifically, this step realizes the preprocessing of the data for comparison, and obtains the comparison data that can be used for the initial mutation detection analysis, and then further optimizes the comparison result according to the training data set to obtain the final comparison da...

Example Embodiment

[0086] Embodiment two:

[0087] In describing the details of the various embodiments of the present invention, reference will be made to image 3 To describe a suitable computing architecture that can be used to implement the principles of the present invention. In the following description, unless otherwise specified, various embodiments of the present invention will be described with reference to symbolic representations of actions and operations performed by one or more computers. From this, it can be understood that such actions and operations sometimes referred to as computer-executed include the manipulation of electrical signals that represent data in a structured form by the processing unit of the computer. This manipulation transforms the data or maintains it at a location in the computer's memory system, which reconfigures or changes the operation of the computer in a manner understood by those skilled in the art. The data structure of the maintenance data is the physi...

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Abstract

The invention discloses a method and device for processing a file needing mutation detection. The method includes the first step of obtaining comparison data according to the file needing mutation detection, the second step of carrying out preprocessing and/or correction processing on the comparison data to obtain the comparison data used for mutation detection, the third step of carrying out mutation detection on the comparison data used for mutation detection to obtain a mutation detection result, and the fourth step of carrying out advanced treatment on the obtained mutation detection result and then outputting the result. Through the method and device, the mutation detection method can be used for various types of comparison data, and meanwhile the mutation detection design and operation are simplified.

Description

technical field [0001] The invention relates to the field of biological information processing, in particular to a method and device for processing files to be detected for mutation. Background technique [0002] Existing mutation detection software, such as Samtools, SOAPsnp, DIndel, realSFS, GATK, etc., usually has the following three main design forms: first, the basic information statistics for mutation detection are generated after the comparison data is input, and the previous comparison data The processing, execution of mid-term mutation detection, and late-stage mutation data filtering all need to rely on other tools and self-design; second, after inputting comparison data, a single mutation detection method can be executed and redundant mutation data results can be generated, but The processing of comparison data in the early stage and the filtering of mutation data in the later stage still need to rely on other tools and self-design; the third is to provide some in...

Claims

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Application Information

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IPC IPC(8): G06F17/30G06F19/18
CPCG16B50/00
Inventor 闫军吴俊张钰
Owner BEIJING NOVOGENE TECH CO LTD
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