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Multiple digital PCR chip and use method thereof

A chip and digital technology, applied in the field of microfluidic chip analysis, can solve the problems of insufficient accuracy and reliability of multiplex digital PCR, and achieve the effect of avoiding the problem of reaction competition, enhancing feasibility, promoting development and wide application

Active Publication Date: 2017-10-20
CHONGQING UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Zhong et al. used the same fluorescein FAM to label probes of different mutation types, and then added them to the PCR mixture at different concentrations, and used the fluorescence intensity of the positive milk droplets after the digital PCR reaction to determine which mutations occurred and the types of mutations. [Zhong Q, Bhattacharya S, Kotsopoulos S, et al.Multiplex digital PCR: breaking the onetarget per color barrier of quantitative PCR.Lab on a Chip,2011,11(13):2167-2174.], but due to PCR amplification The fluorescence intensity of the product is often easily interfered by other factors, so this method has certain shortcomings in the accuracy and reliability of multiplex digital PCR detection

Method used

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  • Multiple digital PCR chip and use method thereof
  • Multiple digital PCR chip and use method thereof
  • Multiple digital PCR chip and use method thereof

Examples

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Effect test

Embodiment 1

[0040] Using multiple digital PCR chips to conduct circulating tumor DNA "liquid biopsy" research, taking the detection of KRAS mutations in peripheral blood of lung cancer patients as an example, the specific steps are as follows:

[0041] (1) Chip, primer and sample preparation

[0042] A multiplex digital PCR chip containing 7 microcavity arrays, a PDMS micropump with a micropillar array structure and a PDMS micropump with a through-hole structure were fabricated respectively;

[0043] Prepare 7 pairs of specific primers for the 7 mutation sites of codon 12 and codon 13 of exon 1 of KRAS (including 6 mutation sites of codon 12: Gly12Asp, Gly12Val, Gly12Ser, Gly12Cys, Gly12Ala, Gly12Arg, 13 Codon 1 mutation site: Gly13Asp);

[0044] Extract circulating DNA from the peripheral blood serum of patients with lung cancer, and mix the extracted DNA sample with polymerase, probe, buffer, etc. to prepare a sample solution;

[0045] (2) Micro pump treatment

[0046] A plurality of...

Embodiment 2

[0062] Multiplex digital PCR chip for multiplex foodborne pathogen detection to detect enterotoxic Escherichia coli (E.coli-ETEC), Bacillus cereus (Bacillus cereus), Salmonella spp, Escherichia coli 0157:H7 (E.coli-0157:H7), Staphylococcus aureus (Staphylococcus aureus), and Listeria monocytogenes (Listeria monocytogenes) six food-borne pathogens as examples, the specific steps are as follows:

[0063] (1) Chip, primer and sample preparation

[0064] A multiplex digital PCR chip containing 6 microcavity arrays, a polydimethylsiloxane (PDMS) micropump with a microcolumn array structure and a polydimethylsiloxane (PDMS) micropump with a through-hole structure were fabricated respectively ;

[0065] Prepare 6 pairs of specific primers for enterotoxic Escherichia coli, Bacillus cereus, Salmonella, Escherichia coli 0157:H7, Staphylococcus aureus and Listeria monocytogenes respectively;

[0066] Extract nucleic acid from the sample to be detected by magnetic bead method, and mix t...

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Abstract

The invention relates to a multiple digital PCR chip and a use method thereof. The chip does not need to be driven by a precise micro-pump and be controlled by a complex micro-valve and does not need a complex macro-micro interface. The chip realizes simple, fast, low cost and large-scale autodecomposition and quantitative uniform distribution of samples. Compared with the existing commercial PCR chip, the chip greatly reduces the complexity and operating cost of the digital PCR system, simplifies the experimental operation and is free of professional training of an operator. The chip realizes the independence of each PCR reaction unit through microcavity arrays, is free of a surfactant and prevents the influence caused by an additive on the reaction system. Through integration of the isolated microcavity array zones and pre-deposition of primers corresponding to different specific target molecules in the microcavities in different zones, the chip can realize multiple detection through one step. The chip has the advantages of operation simpleness, low cost and strong multiple detection capacity and can promote development and wide application of the digital PCR technology.

Description

technical field [0001] The invention belongs to the technical field of microfluidic chip analysis, and in particular relates to a multiple digital PCR chip and a using method thereof. Background technique [0002] Polymerase chain reaction (PCR) is an in vitro nucleic acid amplification technology, which can efficiently and rapidly amplify trace target nucleic acids in vitro for detection and application. With the continuous development of molecular biology technology, PCR technology is constantly updated, and is currently transforming from traditional quantitative PCR to digital PCR. The principle of digital PCR is to decompose the sample into thousands or even millions of droplets (each droplet acts as an independent PCR reaction unit), until each droplet contains one or zero target molecules , when all droplets undergo PCR amplification at the same time, the droplets containing the target molecule will generate a positive signal due to the amplification of the target mol...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): B01L3/00G01N21/64
CPCB01L3/5027B01L3/50273B01L2200/10B01L2300/0861B01L2300/0887B01L2300/12B01L2400/0475G01N21/6486
Inventor 李刚宁勇峰
Owner CHONGQING UNIV
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