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HLA-B*5801 genetype rapid detection kit based on POCT mode

An HLA-B, genotype technology, applied in the field of molecular biology, can solve the problems of high mortality, difficult to meet the requirements of rapid and accurate detection, and unsatisfactory clinical promotion, achieve high detection sensitivity, avoid medication errors, and operate easy effect

Inactive Publication Date: 2019-01-22
重庆京因生物科技有限责任公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

According to statistics, about 2% of patients taking allopurinol have skin allergic reactions of varying severity clinically, although less than 1% of the cases will turn into drug hypersensitivity syndrome, Stevens-Johnson syndrome and toxic epidermal necrolysis severe skin adverse reactions including symptoms, but its mortality rate is as high as 10%-40%
Although this method has the advantages of low cost, short time and simple result analysis, since the reaction system can only amplify purified genomic DNA samples, multi-step and multi-tube operations must be used, which is not ideal for clinical promotion.
Therefore, these conventional detection techniques are difficult to meet the requirements of fast and accurate HLA-B*5801 gene detection for the population carrying the HLA-B*5801 mutation gene in China

Method used

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  • HLA-B*5801 genetype rapid detection kit based on POCT mode
  • HLA-B*5801 genetype rapid detection kit based on POCT mode
  • HLA-B*5801 genetype rapid detection kit based on POCT mode

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0078] Example 1 Performance test of cell lysate

[0079] PCR is an extremely sensitive technique for the detection of trace amounts of DNA. At present, the main samples of painless and non-invasive detection methods in clinical practice include oral swabs, hair, nails, oral saliva and body cavity fluid, etc. After the contained DNA is extracted and purified, it can be added to the PCR reaction system for reaction, which requires a lot of manpower, material resources, and financial resources. In order to solve this problem, and considering that the amplification effect after directly adding cells is not ideal, and it is not suitable for clinical testing, the inventors tried to add a certain concentration of cell lysate. And the comparative experiment of adding cell lysate and not adding cell lysate was carried out. (Note: Exfoliated cells are used as templates)

[0080] The reagent formula is shown in Table 1-1, and 100 replicates were prepared for each of the three differe...

Embodiment 2

[0098] Example 2 LNA modified probe improves typing accuracy

[0099] LNA is an oligonucleotide derivative that has a similar structure to DNA / RNA, so it can recognize and bind DNA and RNA powerfully. After LNA is used to modify oligonucleotides, it can increase the thermal stability of primers or probes and increase their annealing temperature by 3-8°C. The probes developed in this kit are modified with LNA. According to the software prediction, the Tm values ​​of the modified wild-type probes and mutant probes combined with the template are all increased by about 4°C. In order to fully demonstrate the difference between LNA-modified probes and non-LNA-modified probes, the following comparative experiments were carried out. The PCR system is shown in Table 2-1, and wild homozygotes, heterozygotes and mutant homozygotes were detected respectively, and three sets were made for each genotype. Repeat, see Table 1 for the reaction procedure.

[0100] The primers and probe sequen...

Embodiment 3

[0116] Example 3 Optimum ratio optimization experiment of primers and probes

[0117] After the specific primers and probes are screened and confirmed, the concentration of primers and probes in the PCR reaction system needs to be optimized (using oral cells as templates). The PCR reaction system corresponding to the primer and probe concentration is shown in Table 3-1.

[0118] Table 3-1 Primer probe concentration experiment PCR reaction overall system formula table

[0119]

[0120] The final concentrations of sodium lauryl sulfate and polyethylene glycol octylphenyl ether in the above PCR reaction system are 0.005% w / v and 0.01% w / v.

[0121] Experimental results:

[0122] (1) Primer concentration gradient experiment (concentration one, concentration two, concentration three)

[0123] a. The statistical results of Ct value are shown in Table 3-2 and Figure 7 :

[0124] Table 3-2 Ct value statistics of three primer concentrations

[0125]

[0126] b. The statist...

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Abstract

The invention provides an HLA-B*5801 genetype rapid detection kit based on a POCT mode. The kit at least contains fluorogenic quantitative PCR primers and probes (SEQ ID NO:1-4) as well as a cell lysis solution, and can further comprise dNTPs, DNA polymerase, Mg<2+>, a reaction buffer, a standard positive template, a sampling bar, a sample collecting tube and the like, wherein the fluorogenic quantitative PCR primers and the probes are used for detecting the HLA-B*5801 (rs9263726) genetypes. The kit can realize instant detection, DNA purification is not needed, a sample can be directly added into a reagent for carrying out a PCR reaction, the kit is particularly suitable for rapidly and accurately detecting samples (such as shedding buccal cells) with low content of DNA, the detection accuracy rate achieves 99% or above, the detection sensitivity is high, and genomic DNA of which the amount is as low as 0.125ng can be accurately detected; and the whole detection consumes short time, adetection result can be obtained within 1h, an administration basis can be provided for a doctor at first time, and thus the administration risk of patients is reduced.

Description

technical field [0001] The invention relates to the field of molecular biology, in particular to a POCT mode-based rapid detection kit for HLA-B*5801 genotype. Background technique [0002] Human leukocyte antigen HLA is a group of genes located on chromosome 6, which is the most complex genetic polymorphism system in humans, and its polymorphism distribution has obvious ethnic characteristics. [0003] Allopurinol, which inhibits uric acid production, is one of the most common drugs causing skin adverse reactions. According to statistics, about 2% of patients taking allopurinol have skin allergic reactions of varying severity clinically, although less than 1% of the cases will turn into drug hypersensitivity syndrome, Stevens-Johnson syndrome and toxic epidermal necrolysis Severe skin adverse reactions including symptoms, but its mortality rate is as high as 10%-40%. [0004] Studies have found that genetically specific side effects of drugs are often closely related to h...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6883C12Q1/6858C12N15/11
CPCC12Q1/6858C12Q1/6883C12Q2600/106C12Q2600/156C12Q2531/113C12Q2563/107
Inventor 贺庭祯罗德朋向霄熊伟黎帮勇钟越刘黎董锐崔奇新杨园
Owner 重庆京因生物科技有限责任公司
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