HLA-B*5801 genetype rapid detection kit based on POCT mode
An HLA-B, genotype technology, applied in the field of molecular biology, can solve the problems of high mortality, difficult to meet the requirements of rapid and accurate detection, and unsatisfactory clinical promotion, achieve high detection sensitivity, avoid medication errors, and operate easy effect
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Embodiment 1
[0078] Example 1 Performance test of cell lysate
[0079] PCR is an extremely sensitive technique for the detection of trace amounts of DNA. At present, the main samples of painless and non-invasive detection methods in clinical practice include oral swabs, hair, nails, oral saliva and body cavity fluid, etc. After the contained DNA is extracted and purified, it can be added to the PCR reaction system for reaction, which requires a lot of manpower, material resources, and financial resources. In order to solve this problem, and considering that the amplification effect after directly adding cells is not ideal, and it is not suitable for clinical testing, the inventors tried to add a certain concentration of cell lysate. And the comparative experiment of adding cell lysate and not adding cell lysate was carried out. (Note: Exfoliated cells are used as templates)
[0080] The reagent formula is shown in Table 1-1, and 100 replicates were prepared for each of the three differe...
Embodiment 2
[0098] Example 2 LNA modified probe improves typing accuracy
[0099] LNA is an oligonucleotide derivative that has a similar structure to DNA / RNA, so it can recognize and bind DNA and RNA powerfully. After LNA is used to modify oligonucleotides, it can increase the thermal stability of primers or probes and increase their annealing temperature by 3-8°C. The probes developed in this kit are modified with LNA. According to the software prediction, the Tm values of the modified wild-type probes and mutant probes combined with the template are all increased by about 4°C. In order to fully demonstrate the difference between LNA-modified probes and non-LNA-modified probes, the following comparative experiments were carried out. The PCR system is shown in Table 2-1, and wild homozygotes, heterozygotes and mutant homozygotes were detected respectively, and three sets were made for each genotype. Repeat, see Table 1 for the reaction procedure.
[0100] The primers and probe sequen...
Embodiment 3
[0116] Example 3 Optimum ratio optimization experiment of primers and probes
[0117] After the specific primers and probes are screened and confirmed, the concentration of primers and probes in the PCR reaction system needs to be optimized (using oral cells as templates). The PCR reaction system corresponding to the primer and probe concentration is shown in Table 3-1.
[0118] Table 3-1 Primer probe concentration experiment PCR reaction overall system formula table
[0119]
[0120] The final concentrations of sodium lauryl sulfate and polyethylene glycol octylphenyl ether in the above PCR reaction system are 0.005% w / v and 0.01% w / v.
[0121] Experimental results:
[0122] (1) Primer concentration gradient experiment (concentration one, concentration two, concentration three)
[0123] a. The statistical results of Ct value are shown in Table 3-2 and Figure 7 :
[0124] Table 3-2 Ct value statistics of three primer concentrations
[0125]
[0126] b. The statist...
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