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Biological sequence database storage method and system

A storage method and storage system technology, applied in bioinformatics, instruments, etc., can solve the problems of inconvenient use, time-consuming and labor-intensive network applications of layers and complexity, and reduce the threshold of information processing, facilitate network transmission, and reduce information complexity. degree of effect

Inactive Publication Date: 2019-12-06
YUNZHOU BIOSCIENCES (GUANGZHOU) INC
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Problems solved by technology

But for users, they must also understand how to use Genbank for format conversion, which is time-consuming and labor-intensive
In addition, although NCBI (National Center for Biotechnology Information, National Center for Biotechnology Information) has a splitting and database storage method for Genbank, the level and complexity of this storage method are not convenient enough for the use of network applications of

Method used

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  • Biological sequence database storage method and system
  • Biological sequence database storage method and system
  • Biological sequence database storage method and system

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Embodiment

[0038] like image 3 As shown, the following five data tables are constructed according to the information about biological sequences in the common storage format of biological sequences: annotation, type, component, node, annotation_types. The annotation table stores the name of the sequence and the corresponding description information, which includes id, detail (detailed description information), name (sequence name), and official (whether the marker element belongs to the relatively formal and meaningful elements defined internally) ), uuid (universal identification code), created_on (generation time), update_on (update time) fields; the type table stores the type of the sequence, which includes id, name (type name) fields; the component table stores the hashcode of the sequence And the sequence itself, which includes fields such as id, hashcode, seq (sequence itself), annotation_id, is_show (whether to display), etc. The node table is the evolutionary tree node that saves...

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Abstract

The invention discloses a biological sequence database storage method and system. The method comprises the following steps: S1, constructing a plurality of data tables for storing partial informationof a biological sequence according to information related to the biological sequence in a general storage format of the biological sequence, and associating the data tables through specific logic; S2,acquiring the biological sequence information, analyzing the acquired biological sequence information, and storing each part of the biological sequence information into a corresponding data table according to an analysis result. Through the method and the device, the information complexity of the biological sequence can be reduced, and convenience is provided for data use and network transmissionof the biological sequence.

Description

technical field [0001] The invention relates to the technical field of data processing, in particular to a method and system for database preservation of biological sequences. Background technique [0002] Most of the existing biological sequences are stored in the form of file formats, such as Genbank (DNA sequence database), FastA (text-based for representing nucleic acid sequences or polypeptide sequences), etc. Various biological software generally have their own data. Save format, which can be converted to a certain extent through the general format Genbank. But for users, they must also understand how to use Genbank for format conversion, which is time-consuming and labor-intensive. In addition, although there is a split and database preservation method for Genbank on NCBI (National Center for Biotechnology Information), the level and complexity of this preservation method are not convenient enough for the use of network applications. of. SUMMARY OF THE INVENTION ...

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): G16B50/30
CPCG16B50/30
Inventor 蓝田李钟文岑文杰
Owner YUNZHOU BIOSCIENCES (GUANGZHOU) INC
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