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Oligonucleotide sequences that identify species of animal

a technology of oligonucleotide sequences and animal species, applied in the field of methods, can solve the problems of high probability of nucleic acid fragmentation and cattle infection with bovine spongiform encephalopathy, and achieve the effect of high sensitivity

Inactive Publication Date: 2010-07-22
NAT INST OF AGROBIOLOGICAL SCI +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0044]Using the method of the present invention, it is possible to detect, with high sensitivity, trace amounts of animal-derived DNA in a sample. It is thus applicable to identify the animal species of trace amounts of meat and bonemeal mixed into feed. More particularly, detection is possible even if trace amounts of cattle-derived meat and bonemeal are mixed into mixed feed for livestock. Further, the primers for the detection of fish-specific DNA according to the present invention are useful for detecting a wide range of fishmeal derived from various fish species that has been mixed into mixed feed or the like.

Problems solved by technology

Currently, there is a problem that cattle is infected with bovine spongiform encephalopathy (BSE) by giving feed containing meat and bonemeal derived from cattle infected with BSE.
However, there are many problems with methods for identifying the animal species that are currently employed.
For example, in meat and bonemeal that has been heat-treated, there is a high likelihood that nucleic acids have been fragmented.

Method used

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  • Oligonucleotide sequences that identify species of animal
  • Oligonucleotide sequences that identify species of animal
  • Oligonucleotide sequences that identify species of animal

Examples

Experimental program
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Effect test

example 1

Specific Detection of Mammal-Derived DNA Sequence

[0082]DNAs from 15 types of meat samples, these being cattle, sheep, goat, deer, pig, horse, rabbit, whale, chicken, codfish, salmon, sardine, crab, prawn, and clam, were prepared as follows. Each DNA sample was diluted in an appropriate concentration in buffer solution (10 mM Tris-HCl, pH 7.5, 20 mM EDTA, pH 7.5), ground using a bead grinding method, and then DNA was extracted using the mtDNA Extractor CT Kit (manufactured by Wako Pure Chemical Industries, Ltd.), which is a commercially available tissue cell mitochondrial DNA extraction kit.

[0083]With each of these DNA samples serving as a template, PCR was performed using anicon5 [SEQ ID NO: 1] and anicon3 [SEQ ID NO: 2] as the 5′ primer and the 3′ primer, respectively. The PCR conditions were as follows: reaction buffer solution (10 mM Tris-HCl, pH 8.3, 50 mM KCl, 1.5 mM MgCl2, 0.001% (w / v) gelatin); heat denaturing at 95° C. for 9 minutes, followed by the cycle of reactions of den...

example 2

Specific Detection of Ruminant-Derived DNA Sequence-1

[0085]With the 15 types of DNA samples prepared in the same manner as in Example 1 (except that a different type of cattle DNA sample was used in place of deer) serving as templates, PCR was performed using rumicon5 [SEQ ID NO: 3] and rumicon3 [SEQ ID NO: 4] as the 5′ primer and the 3′ primer, respectively. The PCR conditions were as follows: heat denaturing at 95° C. for 9 minutes, followed by the cycle of reactions of denaturing at 92° C. for one minute, annealing at 45° C. for two minutes, and extending at 72° C. for two minutes repeated 45 times, and lastly, the product was allowed to react at 72° C. for five minutes. After PCR, the reaction mixture was subjected to agarose gel electrophoresis, and the PCR product (DNA fragments) was detected by ethidium bromide staining. The results are shown in FIG. 6.

[0086]As shown in FIG. 6, by performing PCR using rumicon5 [SEQ ID NO: 3] and rumicon3 [SEQ ID NO: 4] as primers with each an...

example 3

Specific Detection of Ruminant-Derived DNA Sequence-2

[0088]With the 15 types of DNA samples prepared in the same manner as in Example 1 serving as templates, PCR was performed using Fpr-F [SEQ ID NO: 5] and Fpr-R [SEQ ID NO: 6] as the 5′ primer and the 3′ primer, respectively. The PCR conditions were as follows: heat denaturing at 95° C. for 9 minutes, followed by the cycle of reactions of denaturing at 92° C. for 30 seconds, annealing at 50° C. for 30 seconds, and extending at 72° C. for 30 seconds repeated 45 times, and lastly, the product was allowed to react at 72° C. for five minutes. After PCR, the reaction mixture was subjected to agarose gel electrophoresis, and the PCR product (DNA fragments) was detected by ethidium bromide staining. The results are shown in FIG. 7.

[0089]As shown in FIG. 7, by performing PCR using Fpr-F [SEQ ID NO: 5] and Fpr-R [SEQ ID NO: 6] as primers with each animal-derived DNA serving as a template, PCR products from DNAs derived from cattle, sheep, g...

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Abstract

The present invention provides a method for identifying animal species, said method comprises a step of amplifying a DNA fragment by PCR using a DNA in a sample as a template and animal-specific DNA sequences as a primer pair, wherein the animal-specific DNA sequences are derived from a ATP synthase subunit 8 gene or a region proximal thereto of a mitochondrial genome; and a step of detecting the amplified DNA fragment.

Description

CROSS-REFERENCE TO RELATED APPLICATIONS[0001]This application is a Continuation of application Ser. No. 10 / 826,119 filed Apr. 16, 2004, the entire contents of which is hereby incorporated by reference. Applicants request use of the compliant computer readable “Sequence Listing” that is already on file for application Ser. No. 10 / 826,119 filed Apr. 16, 2004 and state that the paper or compact disc copy of the “Sequence Listing” in this application is identical to the computer readable copy filed for application Ser. No. 10 / 826,119 filed Apr. 16, 2004.BACKGROUND OF THE INVENTION[0002]1. Field of the Invention[0003]The present invention relates to methods for identifying animal species and animal-derived DNA-specific primer pairs used therein. More specifically, the present invention relates to methods for identifying animal species that include a step of amplifying an animal-specific DNA sequence derived from the ATP synthase subunit 8 gene of a mitochondrial genome, and primer pairs ...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C12Q1/68C12P19/34
CPCC12Q1/6881C12Q1/6888
Inventor KUSAMA, TOYOKOKADOWAKI, KOICHINOMURA, TETSUYA
Owner NAT INST OF AGROBIOLOGICAL SCI
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