Protease substrate screening method based on solid-loaded mixed protein as screening database

A screening method, protease technology, applied in biochemical equipment and methods, immobilized on/in organic carriers, determination/inspection of microorganisms, etc. Simple, specific and reliable results

Active Publication Date: 2015-03-18
ZHANGJIAGANG IND TECH RES INST CO LTD DALIAN INST OF CHEM PHYSICS CHINESE ACADEMY OF SCI +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

However, the end-group-labeled enzyme-cleaved peptides produced by this method are interfered by a large number of background peptides, which requires selective enrichment materials and labeling quantification methods, as well as multi-step operations such as sample de

Method used

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  • Protease substrate screening method based on solid-loaded mixed protein as screening database
  • Protease substrate screening method based on solid-loaded mixed protein as screening database
  • Protease substrate screening method based on solid-loaded mixed protein as screening database

Examples

Experimental program
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Effect test

Embodiment 1

[0033] Example 1 Screening of caspase 3 substrates based on agarose microspheres as a carrier.

[0034] Preparation of protein samples: Proteins from human acute T-cell leukemia cells (Jurkat) were extracted by non-denaturing lysis. 10 8 Add 4 mL of ice-bathed non-denaturing lysate to each Jurkat cell, and the composition of the lysate is as follows: 50 mM 4-hydroxyethylpiperazineethanesulfonic acid (pH=7.4), 1 mM dithiothreitol, 150 mM sodium chloride, 1% ( v / v) Nonionic surfactant Triton X-100, 1mM ethylenediaminetetraacetic acid, 2% (v / v) protease inhibitor cocktail (Sigma), 2 / 5 tablets of phosphatase inhibitor (PhosSTOP , Roche), 1 mM phenylmethylsulfonyl fluoride. The ultrasonic power in the ice bath was 400W, the ultrasound was performed for 3s, the interval was 5s, and the ultrasound was repeated 180 times. Then centrifuge at 16000g centrifuge for 20min at 4°C, take the supernatant protein, measure the protein concentration to 6.5mg / mL according to the BCA protein co...

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Abstract

The invention discloses a protease substrate screening method based on solid-loaded mixed protein as a screening database. Specifically, mixed protein is bonded onto a solid phase carrier by chemical action to use as the screening database, the protein database is incubated with protease, peptide fragments which are produced by enzyme digestion of substrate protein of the protease in the protein database enter into a solution, non substrate protein cannot be enzyme digested, so that the non substrate protein is completely retained in the solid phase carrier, after solid-liquid separation, qualitative and quantitative identification of the substrate fragments in the solution is performed by bio mass spectrometry so as to obtain the specific protease substrate protein information. The protease substrate screening method is a method using highly specific effects of the protease and a substrate thereof and simplicity of the solid-liquid separation to screen the substrate protein from the mixed protein database.

Description

technical field [0001] The invention is a protease substrate screening method based on immobilized mixed protein as a screening library. Proteases cleave their substrates with high specificity and selectivity. The substrate protein in the protein library immobilized on the solid phase carrier can be digested by protease, and the generated peptides enter the solution, while the non-substrate protein cannot be digested by the enzyme and still remains on the solid phase carrier, through the solid-liquid separation method That is, the enzyme-cleaved peptide of the substrate is selectively separated from the non-substrate protein, and the qualitative and quantitative analysis of the substrate protein is carried out in combination with biological mass spectrometry, so as to obtain the substrate protein of the specific protease. Background technique [0002] As an important regulatory enzyme in life, protease is involved in signal transduction pathways such as cell proliferation, ...

Claims

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Application Information

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IPC IPC(8): C12Q1/37C12N11/10
Inventor 邹汉法王春丽叶明亮
Owner ZHANGJIAGANG IND TECH RES INST CO LTD DALIAN INST OF CHEM PHYSICS CHINESE ACADEMY OF SCI
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