A kit for detecting drug-resistant genes of Mycobacterium tuberculosis and its application
A Mycobacterium tuberculosis and gene technology, applied in the direction of microbial determination/testing, DNA/RNA fragments, recombinant DNA technology, etc., can solve the problems of low sensitivity, long cycle, low capreomycin resistance, etc.
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Embodiment 1
[0205] Example 1, Primers and Probes for Detecting Mycobacterium tuberculosis drug-resistant gene mutations
[0206] 1. Primer design and synthesis
[0207] The drug resistance genes of Mycobacterium tuberculosis to be detected are: rifampicin resistance (rpoB), isoniazid resistance (katG and / or inhA), streptomycin resistance (rpsL), ethambutol resistance (embB) and Fluoroquinolone (gyrA) gene.
[0208] In order to effectively amplify the target gene in the sample, the genome sequence of Mycobacterium tuberculosis H37RV was retrieved from the NCBI database, and the rpoB gene whose GenBank Accession Number is NC_000962 nucleotide 759807-763325 / GenBank Accession Number is NC_000962 No. 2153889 -2156111 nucleotide katG gene / GenBank Accession Number is NC_000962 inhA gene / GenBank Accession Number is NC_000962 781560-781934 nucleotide rpsL gene / GenBank Accession Number is NC_000962 4246514 -4249810 nucleotide embB gene / GenBankAccession Number is NC_000962 7302-9818 nucleotide gyr...
Embodiment 2
[0221] Example 2, real-time fluorescent quantitative PCR detection of multiple mutation sites in the drug-resistant gene of Mycobacterium tuberculosis
[0222] 1. The template used for PCR amplification is rpoB 511CTG→CCG or rpoB 533CTG→CCG or rpoB516GAC→GTC or rpoB 526CAC→CTC or rpoB 526CAC→CGC or rpoB 526CAC→TAC or rpoB526CAC→GAC or rpoB 531TCG→TGG or katG 315AGC→ AAC or katG 315AGC→ACC or inhA-15C→A or rpsL 43AAG→AGG or rpsL 88AAG→AGG or embB 306ATG→ATA or embB 306ATG→GTG or gyrA90GCG→GTG or gyrA 94GAC→GGC or rrs 1401A→G or rrs 1402C→ T or rrs 1484G→T mutation site genomic DNA (i.e. mutant genome) or H37RV genomic DNA (i.e. wild type genome).
[0223] Both the above-mentioned mutant genome and the wild-type genome were subjected to nucleic acid sequencing, and the sequencing results confirmed that the above-mentioned mutant genome and the wild-type genome used as templates were DNA containing target mutant bases or the wild-type genome.
[0224] 2. Real-time fluorescent qu...
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