Nucleic acid, kit and method for rapid detection of C3435T polymorphism of ABCB1 gene
A polymorphism and kit technology, which is applied in the fields of biochemical equipment and methods, recombinant DNA technology, and microbial determination/inspection, etc., can solve the problems of complex operation process, complicated experimental operation and low detection sensitivity of liquid chip method. , to achieve the effect of reducing the process of diluting the sample, fast and simple synthesis, and high sensitivity
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Embodiment 1
[0051] Embodiment 1 primer, probe, verification template design
[0052] The selected primer pins and probes of the present invention are designed for the SNP site at C3435T of the ABCB1 gene. The specific principle of primers and probes is: design wild-type and mutant ARMS primers and Taqman probes for the mutation sites, combined with fluorescent quantitative PCR reaction, to detect genomic DNA extracted from human peripheral blood cells, through real-time fluorescent PCR The signal is collected on the instrument, and the △Ct value of wild type and mutant type is calculated to determine the genotype of the sample DNA.
[0053] After experimental verification, it was finally determined that the specific detection primers for detecting the C3435T polymorphism site of the ABCB1 gene included wild-type downstream primers (ABCB1-RW), mutant downstream primers (ABCB1-RM), common upstream primers (ABCB1-F) and Public detection probe (ABCB1-P), the nucleotide sequence is as follows...
Embodiment 2
[0073] Example 2 The method for detecting the C3435T polymorphic site of the ABCB1 gene by real-time fluorescent PCR
[0074] The wild-type upstream primer, mutant upstream primer, public downstream primer and public detection probe designed according to Example 1 are synthesized, and a fluorophore can be connected to the 5' end of the public detection probe, and a quencher can be connected to the 3' end. Group, wherein the fluorescent group is any one of FAM, JOE, CY3, HEX, and the quenching group is any one of MGB, BHQ1, TAMRA, BHQ2.
[0075]Apply the wild-type primer pair, mutant-type primer pair and public detection probe designed by the present invention to the DNA template of the detection sample to perform real-time fluorescent PCR amplification detection of the C3435T polymorphic site of the ABCB1 gene, using the wild-type reaction system and For the mutant reaction system, a 40 μL reaction system is used, and the 30 μL reaction system is configured as shown in Table 1...
Embodiment 3
[0090] Example 3 The kit for detecting the C3435T polymorphic site of the ABCB1 gene
[0091] The real-time fluorescent PCR kit for rapid detection of ABCB1 gene C3435T polymorphic site includes the following components:
[0092] Wild-type downstream primer: the nucleotide sequence is shown in SEQ ID No.1;
[0093] Mutant downstream primer: the nucleotide sequence is shown in SEQ ID No.2;
[0094] Public upstream primer: nucleotide sequence as shown in SEQ ID No.3
[0095] Public detection probe: the nucleotide sequence is shown in SEQ ID No.4, the 5' end of the public detection probe is connected to a fluorescent group, and the 3' end is connected to a quenching group;
[0096] Wild-type positive control: containing the nucleotide sequence shown in SEQ ID No.8;
[0097] Mutant positive control: containing the nucleotide sequence shown in SEQ ID No.9.
[0098] In order to avoid missed detection and wrong detection, it also includes: quality control primer pairs, quality co...
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