A silver high-salt-resistant nucleic acid sensor and its application
A sensor and salt nucleic acid technology, applied in the field of silver high-salt-resistant nucleic acid sensors, can solve the problems of high cost, complicated processing methods, expensive instruments, etc., and achieve the effects of rapid response, rapid detection, high specificity and sensitivity
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Embodiment 1
[0072] The preparation of embodiment 1 silver ion deoxyribozyme and the production of cleavage product
[0073] The substrate chain, enzyme chain and DNAzyme cleavage products of the DNAzyme designed for silver ions are as follows:
[0074]
[0075] Note: GACTC in the amplified template D is the Nt.BstNBI nicking endonuclease recognition sequence, and the first four base pairs of the sequence (between C and A) are the synthetic strand cleavage sites; the ribozyme cuts the target product C and The amplified target product F is completely complementary to the amplified template D; the GGAGGCGGA sequence at the end of the ribozyme substrate chain A is added to increase the Tm value of binding to the template; the sodium ion cleavage site is after the rA of the ribozyme substrate chain A .
[0076] The preparation method of silver ion deoxyribozyme:
[0077] Mix 4 μL of 10 μM DNAzyme substrate chain stock solution with 4 μL of 10 μM DNAzyme enzyme chain stock buffer (final co...
Embodiment 2
[0079] Embodiment 2 The amplification of silver ion deoxyribozyme cleavage product
[0080] The system for isothermal amplification reaction consists of two parts (system A and system B). Amplification reaction system composition: 30 μL system.
[0081] Part A system composition: 24.2μL system
[0082] Amplification template (1μM stock solution): 6μL (final concentration 0.2μM)
[0083] dNTPs (2.5mM stock solution): 3μL
[0084] Cleavage product of silver ion DNAzyme (1 μM): 6 μL, final concentration 0.2 μM
[0085] Ultrapure water: 9.2μL
[0086] Part B system composition: 5.8 μL
[0087] Bst DNA polymerase (8U / μL stock solution): 0.1μL (final concentration 0.02U / μL)
[0088] Polymerase reaction buffer solution (10x stock solution): 3 μL (final concentration 1x)
[0089] Nt.BstNBI nicking endonuclease (10U / μL stock solution): 1.2μL (final concentration 0.37U / μL)
[0090] Nt.BstNBI nicking endonuclease reaction buffer solution (10x stock solution): 1.5 μL (final concen...
Embodiment 3
[0094] Embodiment 3G-Preparation of Quadruplex Functional Nucleic Acid Colorimetric Sensor
[0095] 80 μL enzyme activity buffer (100mM Tris, 120mM NaCl, 10mM MgCl 2 , 100mM KCl, pH8.4), 10μL hemin dilution solution (2μL hemin stock solution (10μM) mixed with 1mL enzyme activity buffer) mixed with 10μL of the material to be developed (i.e. the amplification product), and mix well Afterwards, react at 37°C for 30 minutes to make the amplified product combine with hemin to form a G-quadruplex structure, add 50 μL TMB chromogenic solution, mix well, react at 37°C for 10 minutes, add 50 μL 2M H 2 SO 4 , and mix well to obtain a chromogenic product, and obtain a G-quadruplex functional nucleic acid chromogenic sensor.
[0096] Then carry out microplate reader to measure OD 450 .
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