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52 results about "Deoxyribozyme" patented technology

Deoxyribozymes, also called DNA enzymes, DNAzymes, or catalytic DNA, are DNA oligonucleotides that are capable of performing a specific chemical reaction, often but not always catalytic. This is similar to the action of other biological enzymes, such as proteins or ribozymes (enzymes composed of RNA). However, in contrast to the abundance of protein enzymes in biological systems and the discovery of biological ribozymes in the 1980s, there are no known naturally occurring deoxyribozymes. Deoxyribozymes should not be confused with DNA aptamers which are oligonucleotides that selectively bind a target ligand, but do not catalyze a subsequent chemical reaction.

Deoxyribozyme probe for identifying carbapenem-resistant klebsiella pneumoniae and application of deoxyribozyme probe

The invention discloses a deoxyribozyme probe for identifying carbapenem-resistant klebsiella pneumoniae and application of the deoxyribozyme probe, and belongs to the technical field of deoxyribozyme probes. The method comprises the following steps: firstly, mixing a phosphorylated library chain, a substrate chain and a connecting chain, then, carrying out covalent linkage to construct a DNA library, firstly, carrying out reverse screening, separating and purifying a DNA band of an uncut substrate RNA site, constructing a chain-shaped DNA library by using the obtained DNA band, carrying out forward screening, separating and purifying the DNA band of the cut substrate RNA site, carrying out PCR (Polymerase Chain Reaction) amplification, and recovering a positive-sense chain, so as to obtain the DNA library. The deoxyribozyme probe is obtained by performing repeated screening and enriching, and the probe can recognize carbapenem-resistant klebsiella pneumoniae with high specificity and has the potential of exerting advantages in the aspect of biosensing application.
Owner:DALIAN UNIV OF TECH

Vibrio parahaemolyticus deoxyribozyme label-free biosensor

The invention discloses vibrio parahaemolyticus deoxyribozyme screening and label-free biosensor development. The vibrio parahaemolyticus deoxyribozyme screening and label-free biosensor development comprises the following steps: (1) obtaining a vibrio parahaemolyticus deoxyribozyme sequence; (2) optimizing reaction conditions of the vibrio parahaemolyticus label-free biosensor; and (3) detecting the vibrio parahaemolyticus. The detection principle of the sensor is as follows: when vibrio parahaemolyticus exists, deoxyribozyme is triggered to be self-cleaved, a generated cleaved short chain can be used as a primer for starting rolling circle amplification (RCA), a large number of long-chain DNA products with repeated series G-quadruplex sequences are generated by amplifying a designed RCA annular template, G-quadruplex and ThT can form a G-quadruplex / ThT compound, and the long-chain DNA products can be used for detecting the vibrio parahaemolyticus. The fluorescence is generated under the excitation wavelength of 439 nm, and the higher the concentration of the vibrio parahaemolyticus is, the higher the fluorescence intensity of the system is, so that the simple, convenient, rapid, low-cost and high-sensitivity detection of the vibrio parahaemolyticus is realized.
Owner:CHINA AGRI UNIV +1

Multifunctional DNA nano-material, preparation method thereof and application of multifunctional DNA nano-material in treatment of traumatic brain injury secondary encephaledema

The invention belongs to the field of biological materials, and particularly relates to a multifunctional DNA nanometer material, a preparation method and application of the multifunctional DNA nanometer material in treatment of traumatic brain injury secondary encephaledema. The multifunctional DNA nano material comprises a plurality of deoxyribozyme (DNAzyme) targeting C1q mRNA (messenger Ribonucleic Acid) and a repeating unit which is integrally connected with G-quadruplex / Hemin in series, wherein the G-quadruplex / Hemin is labeled by streptavidin SA and biotin and is used for scavenging free radicals. The DNAzyme for silencing the C1q gene of the mouse is designed on the basis of a bioinformatics method, and the C1q gene overexpressed in an inflammation model can be knocked down to an approximate normal level. The RCA technology mediated self-assembled nano material SA-B / H has excellent enzyme mimetic activity, can effectively remove free radicals such as H2O2 and O2 <.->, and has the potential of in-vivo oxidation resistance. In-vitro experiments prove that SA-B / H can effectively relieve high-level oxidative stress of cells caused by H2O2 stimulation.
Owner:TIANJIN UNIV

Endogenous protein activated deoxyribozyme-based pathogen viable bacteria detection kit

The invention provides a pathogen viable bacteria detection kit based on endogenous protein activated deoxyribozyme. The kit comprises a deoxyribozyme recognition element and a signal transduction element. The deoxyribozyme recognition element is composed of a substrate chain and an enzyme chain, and the signal transduction element is composed of two DNA reporter probes (Sub-F and Sub-Q), wherein the tail ends of the two DNA reporter probes are respectively marked with a fluorescence staining group and a fluorescence quenching group. The deoxyribozyme recognition element can recognize specific endogenous protein of target pathogenic viable bacteria and activate an enzyme chain to cut a substrate chain to generate two independent substrate chain fragments. And then a signal transduction element is introduced to realize specific output of a fluorescence signal. The kit provided by the invention can realize detection of living salmonella by targeting endogenous protein, can sensitively detect 190 CFU / mL of living salmonella with abundance as low as 0.1%, and has a good application prospect in the directions of food safety detection and clinical examination.
Owner:SICHUAN UNIV

Multiple miRNA detection method based on deoxyribozyme or CRISPR / Cas12a and application thereof

The invention relates to a multiple miRNA (micro Ribonucleic Acid) detection method based on deoxyribozyme or CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) / The detection method provided by the invention comprises the following steps: designing a probe 1 and a probe 2 matched with different targets according to the different targets; when a target exists, the probe 1 and the probe 2 are connected to miRNA through T4DNA liguase, then DNA polymerase is introduced for amplification of a DNA chain, the released miRNA is further hybridized with a new probe, the next round of reaction is activated, and signals are circularly amplified. The S1 duplex body generated after amplification can be subjected to multiple characterization through two design modes: the first mode is based on deoxyribozyme detection; and the second mode is to carry out detection based on CRISPR / Cas12a. The method provided by the invention can realize detection of multiple tumor miRNAs, is short in detection time, and provides an important theoretical basis for treatment of tumor diseases.
Owner:BODITAI (XIAMEN) BIOTECHNOLOGY CO LTD +1

Cadmium ion and lead ion detection system and detection method based on CRISPR (clustered regularly interspaced short palindromic repeats) and deoxyribozyme

The invention discloses a cadmium ion and lead ion detection system and method based on CRISPR and deoxyribozyme, and the method comprises the following steps: forming active deoxyribozyme by using target ions and a recognition probe, cutting a redundant sequence in a substrate probe, releasing a semi-activator, and cooperatively activating the activity of CRISPR-Cas12a with the other semi-activator in the system. According to the system, the signal-to-noise ratio and the sensitivity of detection are improved by utilizing the effect of inhibiting cooperative activation by redundant fragments in semi-activators. According to the detection method, nano material modification on the substrate probe is not needed, magnetic separation is not needed, and the detection cost is reduced. The detection process only needs two steps of room temperature incubation reaction, and the two steps are carried out in one reaction tube, so that cross contamination possibly caused by multi-tube reaction is avoided, and the detection process is simplified. The method can be applied to detection of cadmium ions and lead ions in rice or serum samples, and has wide application prospects in the fields of food safety, medical detection and the like.
Owner:JIANGSU SECOND NORMAL UNIVERSITY

Normal temperature amplification-CRISPR Cas12a one-pot method nucleic acid detection system and application thereof

The invention relates to a normal temperature amplification-CRISPR Cas12a one-pot method detection system and a nucleic acid detection method based on the detection system. The detection system consists of a normal-temperature nucleic acid amplification system (unit I) which focuses on target signal amplification and a CRISPR Cas12a system (unit II) which focuses on target recognition and signal output. By means of a self-driven and deoxyribozyme-mediated reaction equilibrium transfer strategy, the equilibrium in the initial stage of the reaction tends to the unit I, and the equilibrium in the middle and later stages of the reaction tends to the unit II, so that the compatibility of the two units is remarkably improved. By means of the system, high-sensitivity and high-specificity portable one-pot detection of nucleic acid targets can be achieved.
Owner:HANGZHOU FOSTER BIOTECHNOLOGY CO LTD

Method for rapidly and multiply detecting breast cancer related protein markers based on cas12a and application of method

The invention belongs to the technical field of biology, and particularly relates to a method for rapidly and multiply detecting breast cancer related protein markers based on cas12a and application of the method. HER2, CEA, CA15-3 and CD63 are taken as protein markers, are fixed on magnetic beads through biotin and streptavidin and are used for recognizing and capturing proteins, meanwhile, protein detection is converted into deoxyribozyme recognition of a cyclic sequence, and signal amplification is performed through cas12a; the method provided by the invention can be used for detecting four breast cancer protein markers in a system in a short time, is simple to operate, does not need to heat up, has high accuracy and specificity, accelerates the progress of breast cancer diagnosis and postoperative and prognostic diagnosis, and provides reference for subsequent treatment of clinicians.
Owner:BODITAI (XIAMEN) BIOTECHNOLOGY CO LTD +1

A method for imaging magnesium ions in living cells based on chemically modified deoxyribozymes

The application discloses a method for imaging magnesium ions in living cells based on chemically modified deoxyribozyme, and belongs to the technical field of metal ion imaging. The method comprises the following steps: chemically modifying deoxyribozyme 10-23, screening and obtaining deoxyribozyme 10-23 (CaBn) which is modified with carboxyl (Ca) at the 8th position of the catalytic ring and benzene ring (Bn) at the 12th position; performing biochemical characterization and comparison; constructing a fluorescence sensor responding to magnesium ions; characterizing the performance; and applying the fluorescence sensor to imaging magnesium ions in living cells. Compared with the wild type, the application can catalyze the cleavage reaction under the condition of lower concentration of magnesium ions; therefore, the fluorescence sensor constructed from the deoxyribozyme can more effectively respond to lower concentration of magnesium ions in vitro, and the detection limit reaches 0.03 mM; in addition, the fluorescence sensor can perform fluorescence imaging on endogenous magnesium ions in living cells, and provides a new molecular tool for the field of molecular biology.
Owner:NANJING UNIV

Escherichia coli non-amplification type rapid detection method based on deoxyribozyme probe

The invention belongs to the technical field of biological detection, and particularly relates to an escherichia coli non-amplification type rapid detection method based on a deoxyribozyme probe. The method comprises the following steps: detecting Escherichia coli by adopting a fluorescent chip, mixing Escherichia coli lysate and RFD-EC recognition molecules for reaction, dripping into the fluorescent chip for reaction, and detecting the fluorescence intensity after the reaction; the fluorescent chip takes paper as a substrate and is coated with d-DNA, the nucleotide sequence of the d-DNA is shown as SEQ ID NO.3, and the 5'end of the d-DNA is marked with biotin. Fluorescent DNA molecules are enriched through a fluorescent chip micro-fluidic technology, and detection can be completed within 0.5-1 hour without enrichment culture in combination with multi-channel fluorescence detection. The detection lower limit of the method is as low as 100 CFU, and the method has the advantages of rapidness, sensitivity and low cost, is suitable for on-site rapid detection of Escherichia coli in clinical samples and environmental samples, and has important application value in the fields of pollution control and the like.
Owner:LIAONING NORMAL UNIVERSITY

Micro-fluidic chip based on deoxyribozyme and photonic crystal technology and application thereof

The invention discloses a microfluidic chip based on deoxyribozyme and photonic crystal technology and application thereof, and belongs to the technical field of analysis and detection. The microfluidic chip based on the deoxyribozyme and photonic crystal technology is mainly composed of a deoxyribozyme sample inlet, an escherichia coli sample inlet, a snakelike reaction flow channel, a magnetic bead enrichment chamber and a signal detection chamber, polystyrene balls serve as photonic crystals to be assembled in the signal detection chamber, and magnets are fixed to the bottom of the magnetic bead enrichment chamber. In a reaction flow channel, after deoxyribozyme coupled to a magnetic bead reacts with an escherichia coli target, a substrate chain with an FAM fluorophore is broken and enters a signal detection cavity along with flowing of fluid, under irradiation of 488 nm exciting light, a fluorescence microscope is used for observing a fluorescence image, the fluorescence intensity is in direct proportion to the content of the escherichia coli target, and the fluorescence intensity is in direct proportion to the content of the escherichia coli target. And the detection time is about 25 minutes. The micro-fluidic chip disclosed by the invention is light and portable, rapid in detection, high in sensitivity and good in selectivity, and can realize on-site quantitative detection of an object to be detected.
Owner:DALIAN UNIV OF TECH

A capillary monolithic column modified with DNAzyme nanoflowers, its preparation method, and application in separating chiral molecules

The present invention discloses a capillary monolithic column modified with a deoxyribozyme nanoflower, a preparation method thereof, and an application thereof in separating chiral molecules, belonging to the field of pharmaceutical analysis. The present invention synthesizes a deoxyribozyme-based nanoflower chiral selector, the nucleotide sequence of the single-stranded DNA template of the deoxyribozyme being shown in SEQ ID NO.1, and the synthesized deoxyribozyme nanoflower having good pH and temperature stability. The prepared deoxyribozyme nanoflower is bonded to a graphene oxide-functionalized capillary silica monolithic column, and chiral molecules are separated under electrophoretic conditions, achieving baseline separation of 2'-deoxyadenosine, atenolol, propranolol, tyrosine, and nafopam enantiomers.
Owner:CHANGZHOU UNIV

Deoxyribozyme binding arm, kit, biosensor and nucleic acid detection method

The invention relates to a deoxyribozyme binding arm, a kit, a biosensor and a nucleic acid detection method. The deoxyribozyme binding arm is of an annular structure and comprises a catalytic core A sequence of deoxyribozyme, a monomer amplicon recognition region, a sequence of a fragment containing a detection probe and a deoxyribozyme substrate recognition region; wherein the catalytic core part sequence of the deoxyribozyme comprises a part of sequence in any one of 8-17 type deoxyribozyme, E6 type deoxyribozyme or 10-23 type deoxyribozyme. The invention provides a deoxyribozyme binding arm and a multifunctional DNA nano-machine obtained by combining the deoxyribozyme binding arms, which integrate cutting enhanced rolling circle amplification, self-cutting DNAzyme and rolling circle amplification technologies, construct a self-cascade amplification nano-machine, and can perform molecular signal amplification on the existence of a formulated sequence. The system exhibits an increase in cascade reaction efficiency due to the minimization of the number of independent molecular diffusion / collision events.
Owner:CENT SOUTH UNIV

Preparation of photo-activated manganese ion bridged deoxyribozyme probe and application thereof in inhibiting acetylcholinesterase activity of cistanche

The application discloses a kind of photoactivation manganese ion bridging type deoxyribozyme probe preparation and its application in Cistanche inhibiting acetylcholinesterase activity.The probe is pSD@MnO2 Composite structure, which is composed of manganese dioxide nanosheet and functional nucleic acid assembly adsorbed on its surface, the assembly includes S chain labeled with fluorescence / quenching group and containing deoxyribozyme cleavage site, and pD chain partially hybridized with S chain and containing photocleavage site.Its preparation includes nucleic acid probe assembly, MnO2 Nanosheet complexing and purification steps.When applied, AChE catalytic product decomposes MnO2, releases Mn 2+ And nucleic acid chain; after centrifugation, pD chain is cut by ultraviolet light activation trigger, and released DNAzyme is cut under the assistance of Mn 2+ It produces amplified fluorescence signal; by comparing signal change before and after adding inhibitor, inhibition activity can be quantitatively evaluated.The application combines photocontrol activation with enzyme cascade amplification, realizes high sensitivity and operation synchronism of detection process, and is especially suitable for high-throughput rapid screening of AChE inhibitor in Cistanche and other natural products.
Owner:SHANGHAI TONGSHENGCHUN TECHNOLOGY CO LTD +1

A porous silicon deoxyribozyme fluorescent probe and its application in evaluating the anticancer activity of traditional Chinese medicine

The present invention discloses a porous silicon deoxyribozyme fluorescent probe and its application in evaluating the anticancer activity of traditional Chinese medicine. The fluorescent probe comprises amino-modified porous silica nanoparticles, fluorescent molecules loaded in the nanoparticle pores, and DNA hairpins HP1 and HP2 covalently linked to the nanoparticle surface. The HP1 sequence contains a complementary sequence to the microRNA to be detected, and the HP2 sequence contains a zinc ion-specific deoxyribozyme cleavage site. After HP1 binds to the microRNA, the root is opened, the HP1 loop undergoes a conformational change, and binds to the HP2 loop nucleotide sequence. With the assistance of zinc ions, the zinc ion-specific deoxyribozyme is activated, which then cuts HP2 at the cleavage site, releasing the fluorescent molecules in the nanoparticle pores. The microRNA is detected based on the intensity of the fluorescent molecules. The probe can specifically and sensitively detect trace amounts of microRNA in a system.
Owner:CHINA PHARM UNIV

Tobacco mosaic virus RNA electrochemical detection kit based on DNA tetrahedron and multi-component deoxyribozyme signal amplification strategy

The invention discloses a tobacco mosaic virus RNA electrochemical detection kit based on a DNA tetrahedron and a multi-component deoxyribozyme signal amplification strategy. The kit mainly comprises a gold electrode, TA, TB, TC, TD, a part of enzyme A, a part of enzyme B, HP, MCH, SA-ALP and BSA. According to the kit, the detection sensitivity is remarkably improved on the basis of DNA tetrahedron ordered modification and a multi-component deoxyribozyme double-signal cascade amplification strategy. Experiments prove that compared with similar plant virus nucleic acid detection methods, the electrochemical detection kit designed by the invention is wider in detection range and lower in detection limit. The kit disclosed by the invention has the advantages of high efficiency, convenience in operation and environmental friendliness, and still has 92% of original signal strength after being placed for two weeks, so that the kit is proved to be good in stability. And in addition, the method shows accurate and excellent detection performance in a sample adding and recycling experiment of the healthy rehmannia root RNA extract, and has potential application value.
Owner:HENAN UNIV OF CHINESE MEDICINE

Method for controlling activity of deoxyribozyme through intramolecular cyclization and application thereof

The invention provides a method for controlling activity of deoxyribozyme through intramolecular cyclization and application of the method, and relates to application of the method in the field of biological analysis and regulation. According to the method, a ring-forming chain is subjected to intramolecular connection mainly through T4DNA ligase and a splint chain to form a ring-shaped molecule, so that active conformation cannot be formed, and catalytic activity cannot be lost. Meanwhile, by modifying functional elements (such as photosensitive groups, disulfide bonds and the like) on the deoxyribozyme, the annular deoxyribozyme can be opened and converted into a linear structure under specific conditions (such as illumination, a reducing agent and the like), so that the catalytic activity of the annular deoxyribozyme is recovered. The cyclic deoxyribozyme molecule has a good enzyme digestion resistant effect and biological stability. The method is simple and efficient, can be used for controlling the catalytic activity of deoxyribozyme in living cells, realizes space-time selective sensing analysis and metabolism regulation of target biomolecules, and is extremely high in application value.
Owner:THE NAT CENT FOR NANOSCI & TECH NCNST OF CHINA

Paper-based sensor device based on deoxyribozyme probe and application

The invention discloses a paper-based sensor device based on a deoxyribozyme probe and application, and belongs to the technical field of analysis and detection. The paper-based sensor based on the deoxyribozyme probe by using the fluorescence signal is constructed, complex treatment on a sample is not needed, only a bacterial lysis buffer needs to be added into the sample for lysis, the deoxyribozyme is enabled to cut the deoxyribozyme probe by the generated escherichia coli CIM specificity, so that a sequence fragment containing an FAM group modified on the deoxyribozyme probe falls off, and the detection result is accurate. A complementary sequence modified at a detection line is used for capturing, a fluorescence signal is read to realize the detection purpose, and the whole reaction process can be completed within 30 minutes. The method integrates the processes of bacterial lysis, reaction sampling, bacterial detection and the like, avoids the complex and time-consuming operation process of a traditional method, has the analysis performance of rapidness, simplicity, rapidness, low cost and the like, and has potential application value in analysis and detection of various complex liquid bacteria in the clinical medicine field.
Owner:DALIAN UNIV OF TECH

Glyphosate fluorescence detection method based on RNase H cycle amplified magnetic bead-aptamer-Cas9 / deoxyribozyme

The invention discloses a glyphosate fluorescence detection method based on RNase H cycle amplified magnetic bead-aptamer-Cas9 / deoxyribozyme, belongs to the technical field of environmental monitoring and biological detection, and can realize high-sensitivity and rapid quantitative detection of glyphosate residues in soil, water bodies and agricultural products. According to the method, the glyphosate is combined with an aptamer to release complementary DNA (cDNA) combined with the aptamer, then signal cascade amplification is realized through RNase H-mediated cDNA cyclic utilization, the anti-interference advantage brought by magnetic bead separation is combined, and the known characteristics of Cas9 endonuclease and DNAzyme in the aspects of nucleic acid recognition and cutting are used as signal amplification and transduction means, so that the detection sensitivity of the glyphosate is improved, and the detection sensitivity of the glyphosate is improved. Therefore, trace detection of glyphosate is realized. According to the invention, sensitive detection of other targets can be realized by replacing nucleic acid aptamers capable of specifically recognizing other targets and correspondingly adjusting the sequence of cDNA to maintain base pairing.
Owner:JILIN UNIVERSITY

Targeting sieve tube-vector insect lysozyme-nano magnesium composite system and application thereof in prevention and control of areca yellows

The invention belongs to the technical field of agricultural biological protection, and discloses a targeted screen tube-vector insect lysozyme-nano magnesium compound system and application thereof in prevention and control of areca yellows, the compound system comprises an in-plant treatment module and a propagation blocking module, the in-plant treatment module comprises a screen tube targeted delivery unit, and the propagation blocking module comprises a propagation blocking unit. The sieve tube targeted delivery unit is formed by combining betel nut sieve tube navigation peptide ArePEP1 and a lysozyme-nano magnesium complex through a non-covalent bond; the propagation blocking module comprises an antifeedant micro-capsule activated by salivary enzyme of a vector insect, and phytoplasma deoxyribozyme PdeA and an insect antifeedant are encapsulated in the antifeedant micro-capsule; the target sequence of the phytoplasma deoxyribozyme PdeA is 5 '-GGAAACAG-3'; the in-plant treatment module and the propagation blocking module are jointly loaded on the same delivery vehicle. According to the areca yellows prevention and control compound system and the application method, pathogens in plants can be synchronously inhibited, insect propagation can be blocked, and high-altitude accurate delivery can be realized.
Owner:JIANGXI YUANSHENG CHUANGHE BIOTECHNOLOGY CO LTD

Electrochemical detection method for escherichia coli based on deoxyribozyme

The invention discloses an electrochemical detection method for escherichia coli based on deoxyribozyme, and belongs to the technical field of analysis and detection. The method comprises the following steps: reducing sulfydryl of a deoxyribozyme-substrate connector, dropwise adding the reduced sulfydryl to a working electrode in a silk-screen printing gold electrode to immobilize deoxyribozyme, and dropwise adding 6-mercaptohexanol on the surface of the working electrode to seal unincubated sites on the surface of the gold electrode; dropping an escherichia coli intracellular mixture CIM prepared by cell disruption onto the silk-screen printing gold electrode, enabling the mixed solution to cover the working electrode, the counter electrode and the reference electrode, connecting an electrochemical workstation, and detecting the peak position and intensity. When deoxyribozyme is combined with an escherichia coli target, RNA in a deoxyribozyme-substrate connector is subjected to enzyme digestion, a substrate with methylene blue falls off, a methylene blue group is far away from the silk-screen printing gold electrode, an electric signal disappears subsequently, and rapid detection of escherichia coli in the environment is achieved.
Owner:DALIAN UNIV OF TECH

Biological preparation method and application of DNA (deoxyribonucleic acid) nanostructure with aptamer for targeting tumor cells

The invention discloses a preparation method and application of an aptamer functionalized DNA nano-structure targeting tumor cells, the DNA nano-structure is prepared by performing enzyme digestion, annealing and origami on loop single-stranded DNA produced by a biological method, and particularly relates to optimization of deoxyribozyme in phagocytids, widening of pH range of cut loop single-stranded DNA and shortening of enzyme digestion time. The single-stranded DNA capable of being automatically folded into the DNA nanostructure is efficiently prepared; according to the present invention, the nucleic acid aptamer is inserted into the customized sequence so as to functionalize the customized sequence, and the produced and prepared functionalized DNA nano-structure has characteristics of no toxicity on cells, drug loading, specific tumor cell targeting, and cell toxicity stronger than the free drug, and can achieve the specific targeting and killing effects on the tumor cells; therefore, efficient preparation of the DNA nanostructure can be realized, and functional targeted tumor cell drug release can be carried out.
Owner:EAST CHINA UNIV OF SCI & TECH

Droplet microfluidic detection system for detecting pathogenic bacteria based on deoxyribozyme probe

The invention discloses a droplet microfluidic detection system for detecting pathogenic bacteria based on a deoxyribozyme probe, which belongs to the technical field of microbiological detection, and mainly comprises an automatic sample introduction device, a microfluidic droplet generation chip, a capillary tube-laser induced fluorescence detector and a signal acquisition and analysis device, the pathogen detection process comprises the following steps: respectively and automatically injecting an actual water sample, a deoxyribozyme probe, liquid drop oil, a pathogen lysis solution and a reaction buffer solution into the microfluidic liquid drop generation chip by the automatic sample injection device, stably generating liquid drops, and detecting the liquid drops through the capillary tube-laser induced fluorescence detector, and the signal acquisition and analysis device acquires and analyzes the fluorescence signal. The method has the advantages of high detection flux, high stability, high sensitivity, rapidness and the like, and can be applied to the field of environmental microbiological detection.
Owner:DALIAN UNIV OF TECH

A double-stranded nucleic acid detection composition based on lambda exonuclease and deoxyribozyme and application thereof

The application discloses a double-stranded nucleic acid detection composition based on lambda exonuclease and deoxyribozyme and application thereof, and belongs to the technical field of biological technology, and aims to efficiently and sensitively detect double-stranded nucleic acid. The double-stranded nucleic acid detection composition based on lambda exonuclease and deoxyribozyme comprises a double-stranded nucleic acid detection probe, lambda exonuclease and a reporter molecule, the double-stranded nucleic acid detection probe comprises one long single-stranded DNA named recognition chain R and n short single-stranded DNAs named Dz; the recognition chain R comprises a target binding domain and n Dz binding domains arranged in sequence from 5' to 3' in order; the 5' end of the recognition chain R is modified with a functional group; the Dz is a deoxyribozyme capable of cleaving the reporter molecule when the Dz is single-stranded, and the 5' end of the Dz is modified with sulfur. The application has high sensitivity and specificity, and the detection limit can be as low as a femtomole.
Owner:BEIJING UNIV OF CHEM TECH

A calcium carbonate manganese nanoprobe for in-situ imaging detection of proteins and a preparation method and application thereof

This invention belongs to the medical field and provides a calcium carbonate manganese nanoprobe for in situ imaging detection of vascular epidermal growth factor, its preparation method, and its application. In this strategy, a DNA strand (P1 and P2) containing a protein recognition antibody, a protein recognition sequence, and a deoxyribonuclease, along with a molecular beacon DNA strand (H1), is stirred in a DMEM cell culture medium containing calcium chloride and manganese chloride to prepare the calcium carbonate manganese nanoprobe. In acidic tumor cells, this nanoprobe releases P1, P2, H1, and manganese ions. P1 and P2 can simultaneously recognize proteins, forming a complete deoxyribonuclease center, which catalyzes the cleavage of H1 under the action of the cofactor manganese ions, generating a fluorescent signal. This strategy achieves specific in situ dynamic imaging of low-abundance proteins in vivo and has great potential in biomedical research.
Owner:YULIN NORMAL UNIVERSITY

Deoxyribozyme targeting enolase 1 and application of deoxyribozyme in preparation of gene medicine for treating rheumatoid arthritis

The invention discloses deoxyribozyme targeting enolase 1 and application of deoxyribozyme in preparation of a gene medicine for treating rheumatoid arthritis, and belongs to the technical field of biology. On the basis of a mouse ENO1 mRNA secondary structure, 15 deoxyribozyme is designed and screened, Dz8 has the strongest ENO1 mRNA cutting capacity, and the expression level of the gene can be effectively reduced; meanwhile, the Dz8 has Mg-dependent efficient ENO1 mRNA cleavage activity and time-dependent multi-turnover kinetic characteristics, ENO1 expression can be remarkably inhibited at the gene and protein levels, then inflammatory factor secretion is reduced, the glycolysis level is regulated and controlled, and the Dz8 has important application prospects in the field of rheumatoid arthritis gene therapy. The invention provides a new target and a treatment strategy for rheumatoid arthritis gene therapy, and Dz8 is expected to become a potential tool for rheumatoid arthritis gene therapy.
Owner:JILIN UNIVERSITY

Method for imaging intracellular nucleic acid based on chemically modified deoxyribozyme

The invention discloses a method for imaging intracellular nucleic acid based on chemically modified deoxyribozyme. The method comprises the following operation steps: carrying out chemical functional group modification on each site of a catalytic ring of deoxyribozyme 8-17, and screening to obtain a deoxyribozyme 8-17 variant 11Bn which is subjected to benzyl modification on a No.11 site of the catalytic ring; carrying out biochemical characterization on the variants; by taking miRNA-21 as an example, a multi-component nuclease (MNAzyme) system is constructed based on a variant and is used for specifically detecting intracellular nucleic acid and characterizing the detection performance of the system; manganese dioxide nanosheets for delivering nucleic acid are synthesized, and characterization of material morphology, size and the like is carried out; and the probe is applied to imaging of intracellular nucleic acid in living cells. The nucleic acid sensor constructed on the basis of the modified variant can effectively perform fluorescence response at a lower concentration; in addition, the sensor constructed by the invention does not need a transfection reagent or signal amplification, can perform sensitive fluorescence imaging in living cells, and provides a new molecular tool for diagnosis and treatment of related diseases.
Owner:NANJING UNIV

A Csm6-based deoxyribonuclease sensor and its application in lead detection

This invention provides a Csm6-based deoxyribonuclease sensor, characterized by comprising the following components: (1) a deoxyribonuclease enzyme chain and a deoxyribonuclease substrate chain, wherein the nucleotide sequence of the deoxyribonuclease substrate chain is shown in SEQ ID No. 1 or SEQ ID No. 2 of the sequence listing, and the nucleotide sequence of the deoxyribonuclease enzyme chain is shown in SEQ ID No. 10 of the sequence listing; (2) a Csm6 protease; and (3) a single-stranded RNA reporter probe modified with fluorescent and quenching groups, wherein the sequence of the single-stranded RNA reporter probe modified with fluorescent and quenching groups is shown in SEQ ID No. 16 of the sequence listing. This invention also provides an application of this deoxyribonuclease sensor for lead detection. The deoxyribonuclease sensor provided by this invention can improve the sensitivity and selectivity of existing biosensors in lead ion detection.
Owner:SICHUAN UNIV

Deoxyribozyme probe for recognizing strontium ion and application thereof

This invention discloses a deoxyribozyme probe for recognizing strontium ions and its applications, belonging to the field of deoxyribozyme probe technology. The nucleotide sequence of the deoxyribozyme probe provided by this invention is any one of the sequences shown in SEQ ID NO:1 to SEQ ID NO:9. Specifically, it is a cis-structured deoxyribozyme probe composed of a deoxyribozyme and a substrate chain with a fluorescent group and a quenching group. The substrate chain sequence is shown in SEQ ID NO:10, and the deoxyribozyme sequence is any one of the sequences shown in SEQ ID NO:17 to SEQ ID NO:25. The deoxyribozyme probe provided by this invention can efficiently and specifically recognize strontium ions, thereby achieving accurate detection of the target ion, with a strontium ion response concentration of 2 mM or higher. This probe has good application prospects in the fields of biosensing and ion detection.
Owner:DALIAN UNIV OF TECH

Deoxyribozyme probe for specifically distinguishing G-quadruplex and single-chain structure of G-rich sequence and application of deoxyribozyme probe

The invention discloses a deoxyribozyme probe capable of specifically distinguishing a G-quadruplex and a single-strand structure of a G-rich sequence and application of the deoxyribozyme probe, and belongs to the technical field of deoxyribozyme probes. The method comprises the following steps: firstly, connecting a phosphorylated library enzyme chain with a substrate chain containing RNA (Ribonucleic Acid) modification sites to construct a linear DNA (Deoxyribose Nucleic Acid) library; then, under the condition that the pH is 7.4, co-incubating the library and a G-rich sequence in a single-chain state, separating and purifying a DNA strip for cutting an RNA site in the library, recovering a positive-sense strand after PCR amplification, and carrying out multiple rounds of screening to obtain the chain deoxyribozyme probe. The obtained probe can specifically detect a G-rich sequence in a single-chain form, has no response to a G-quadruplex structure, and has a good application prospect in the field of biosensing.
Owner:DALIAN UNIV OF TECH