HIV gene detecting chip and its prepn process and usage detecting HIV nucleic acid
A gene detection chip and gene fragment technology, applied in the field of HIV nucleic acid detection, can solve the problems of cumbersome operation, increased cost and cross-contamination, difficult to popularize and apply basic clinical detection, etc. Opportunities, effects of improving quality and usability
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[0025] The preparation method of the above-mentioned HIV gene detection chip provided by the embodiment of the present invention, its steps include:
[0026] (1) Add a reaction system containing random hexanucleotide primers in a test tube, the reaction system also contains primer sets SEQ ID NO.14+12, SEQ ID NO.20+10, SEQ ID NO.20+11 , SEQ ID NO.21+13, SEQ ID NO.18+12, SEQ ID NO.15+12, SEQ ID NO.20+9, SEQ ID NO.16+9, SEQ ID NO.17+10, SEQ ID NO.17+10, SEQ ID NO. One or more of ID NO.19+11, complete reverse transcription reaction and PCR amplification for HIV RNA samples at one time;
[0027] (2) Pick positive fragment clones from the fragments obtained above, and save them after sequencing confirmation;
[0028] (3) After the positive fragment primer combination of the above clone is confirmed by RT-PCR in the blood of different patients, select a primer combination probe with high specificity and high sensitivity, that is, a primer with the sequence of SEQ ID NO: 1-6 Combin...
Embodiment 1
[0040] Embodiment 1: Preparation of HIV gene detection chip
[0041] Obtain HIV-specific nucleic acid fragments from HIV-infected persons, clone and store them after verification, and use them as probes for HIV gene detection chips. This method can be subdivided into:
[0042] (1) Add a reaction system containing random hexanucleotide primers in a test tube, the reaction system also contains primer sets SEQ ID NO.14+12, SEQ ID NO.20+10, SEQ ID NO.20+11, SEQ ID NO.21+13, SEQ ID NO.18+12, SEQ ID NO.15+12, SEQ ID NO.20+9, SEQ ID NO.16+9, SEQ ID NO.17+10, SEQ ID NO. One or more of 19+11, complete reverse transcription reaction and PCR amplification for HIV RNA samples at one time;
[0043] Among them, the above-mentioned SEQ ID NO: 14-21 sequence is an oligonucleotide forward primer for HIV-specific fragments; the above-mentioned SEQ ID NO: 9-13 sequence is an oligonucleotide reverse primer for HIV-specific fragments; random six Nucleotide primers refer to primers with a length ...
Embodiment 2
[0097] Embodiment 2: HIV nucleic acid detection method
[0098] (A) HIV RNA is isolated from the sample by:
[0099] Prepare:
[0100] Dissolve Carrier RNA with 1ml SKVR (Solution I) binding solution, and transfer to Solution I bottle.
[0101] Divide the Solution I solution dissolved in Carrier RNA into small portions, and store in a refrigerator at 4°C for 6 months. If there is precipitation, heat at 37°C before use, and do not heat the same reagent more than 5 times.
[0102] Add an equal volume of absolute ethanol to SKVR wash solution A.
[0103] Add absolute ethanol to SKVR washing solution B to a final ethanol concentration of 35%.
[0104] operate:
[0105] Take a 1.5ml centrifuge tube, add 300μl SKVR binding solution, then add 200μl plasma, gently suck 4 times with a micropipette, and let stand at room temperature for 10 minutes.
[0106] Take 200 μl of DEPC-treated water and put it in a small centrifuge tube, put it in a 65°C water bath, and preheat it for late...
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