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Detection primer set for reverse transcription loop-mediated isothermal amplification of Noroviruses, detection method and kit

A loop-mediated isothermal, detection primer technology, applied in the biological field, can solve the problems of inability to apply large-scale pathogen screening and detection, large-scale expensive equipment, cumbersome and time-consuming operation, etc., to achieve enhanced specificity, sensitive detection, Highly sensitive effect

Active Publication Date: 2016-06-08
SHENZHEN KANGMEI BIOTECH
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] At present, the detection methods of norovirus pathogens include electron microscope technology, virus isolation and culture technology, immunology technology and molecular biology technology, but the first three technologies mentioned above often have low sensitivity, cumbersome and time-consuming operations, and require large and expensive instruments and equipment And other shortcomings, often have its limitations in application, especially not suitable for large-scale pathogen screening and detection and other practical applications
Molecular biology technology, especially RT-PCR detection technology, has shown its superiority in virus detection and has been applied more and more due to its fast, sensitive, and suitable for processing large-throughput samples. From the detection to the interpretation of the results, a variety of special instruments are still required, the operation is relatively cumbersome, the time required is still more than 5 hours, and there are often defects such as non-specific appearance.

Method used

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  • Detection primer set for reverse transcription loop-mediated isothermal amplification of Noroviruses, detection method and kit
  • Detection primer set for reverse transcription loop-mediated isothermal amplification of Noroviruses, detection method and kit
  • Detection primer set for reverse transcription loop-mediated isothermal amplification of Noroviruses, detection method and kit

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0035] 1. Materials

[0036] 1.1 NV strains and control strains

[0037] Norovirus (NV) strains were isolated from various places in Guangdong Province. Enteroviruses (Enteroviruses), Rotavirus (Rotavirus, RV), Astrovirus (Astrovirus, AstV), are kept by the laboratory.

[0038] 1.2 Main reagents

[0039] BstDNA polymerase (8U / μL) and supporting buffer are products of NEB; AMV reverse transcriptase (5U / μL), HRP RNase inhibitor (40U / μL) and corresponding buffer, ExTaq DNA polymerase (5U / μL) , dNTPs (2.5mMeach), BamHI (15U / μL), DNAMarkerDL2000, RNAasefreeH2O are all TaKaRa products. RNA extraction reagent TRIzolReagent (TaKaRa); betaine betaine (Sigma); 10000 × SYBRGreen I (Biotech Co., Ltd.); penicillin and streptomycin (BBI); agarose (BIOWEST).

[0040] PBS buffer solution (pH7.2): KH2PO40.2g, Na2HPO4·12H2O2.85g, NaCl8g, KCl0.2g add ultrapure water to 1000mL.

[0041] 50×TAE: Tris base 242g, Na2EDTA 37.2g, glacial acetic acid 57.1mL, add ultrapure water to make up to 1000m...

Embodiment 2

[0067] Example 2: Sensitivity and specificity experiments of RT-LAMP

[0068] 1. Take the above 200 μl norovirus (NV) total RNA, and then dilute it by 10 times. Take 1 μl template for each dilution, and follow the following reaction system: 10×buffer 2.5 μL, dNTPs (10 mM) 3 μL, FIP ( 10 μM) 2 μL BIP (10 μM) 0.5 μL, F3 (10 μM) 0.5 μL, B3 (10 μM) 2 μL, MgSO 4 (25mM) 2μL, Betaine (0.4M) 2.5μL, BstDNA polymerase 1μL, AMV reverse transcriptase 0.25μL, extracted total RNA (norovirus total RNA) 1μL, deionized water to make up to 25μL, the reaction conditions are: Incubate at 64°C for 40 min and perform RT-LAMP to judge the sensitivity. RNAasefreeH2O was used as a negative control.

[0069] 2. Comparative experiment:

[0070] In order to compare the sensitivity and specificity of RT-LAMP amplification, the One-step RT-PCR one-step kit was used simultaneously with the RT-LAMP method.

[0071] According to the kit instructions, the 50 μl reaction system contains 0.4 μM F3 and B3 pri...

Embodiment 3

[0075] Example 3: Specificity of RT-LAMP

[0076] Extract 20 RNAs of norovirus, enteroviruses (EV), rotavirus (RV) and astrovirus (Astrovirus, AstV) from different sources, and obtain 20 total RNAs of norovirus, enterovirus Dowvirus total RNA, rotavirus total RNA and astrovirus total RNA.

[0077] Respectively according to the following reaction system: 10 × buffer 2.5μL, dNTPs (10mM) 3μL, FIP (10μM) 2μL, BIP (10μM) 0.5μL, F3 (10μM) 0.5μL, B3 (10μM) 2μL, MgSO 4 (25mM) 2μL, Betaine (0.4M) 2.5μL, BstDNA polymerase 1μL, AMV reverse transcriptase 0.25μL, extracted total RNA (norovirus total RNA, enterovirus total RNA, rotavirus total RNA or star Virus total RNA) 1 μL, made up to 25 μL with deionized water, and the reaction conditions were as follows: incubate at 64°C for 40 min, and perform RT-LAMP. RNAasefreeH2O was used as a negative control.

[0078] The result is as Figure 7 As shown, norovirus is positive and can be detected, while enterovirus total RNA, rotavirus total RN...

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Abstract

The invention discloses a detection primer set for reverse transcription loop-mediated isothermal amplification (RT-LAMP) of Noroviruses (NV), a detection method and a kit. The detection primer set comprises an upstream outer primer F3, a downstream outer primer B, an upstream inner primer FIP and a downstream inner primer BIP, all of which are shown as the SEQ ID NO. 1, 2, 3 and 4 respectively. The RT-LAMP technology for detecting NV is simple, specific, sensitive and suitable for field detection and simple laboratory detection, and a novel virus detection method is provided. During sample detection, the sensitivity of the RT-LAMP technology reaches 97.7% higher than 90.7% of RT-PCR, and the RT-LAMP technology is more suitable for rapid detection of field samples and rapid detection in a simple laboratory and can be widely applied to hospitals, the food industry, entry and exit inspection and quarantine, quality supervision and other sectors and fields.

Description

Technical field: [0001] The invention belongs to the field of biotechnology, and in particular relates to a norovirus reverse transcription loop-mediated isothermal amplification detection primer set, detection method and kit. Background technique: [0002] Norovirus infectious diarrhea has the characteristics of acute onset, rapid transmission, and wide coverage, and is the main cause of non-bacterial diarrhea outbreaks. Norovirus is highly infectious and mainly spreads through the intestinal tract. It can be transmitted through contaminated water, food, objects, and air. It often causes mass outbreaks in communities, schools, restaurants, hospitals, nurseries, orphanages, and the military. Noroviruses that are prevalent in different regions and at different times have relatively conserved sequences in the RNA polymerase region of their genes. According to the similarity of the nucleotide sequence of the RNA polymerase region, noroviruses are divided into five genogroups. ...

Claims

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Application Information

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IPC IPC(8): C12Q1/70C12Q1/68C12N15/11C12R1/93
CPCC12Q1/6844C12Q1/701C12Q2531/119C12Q2563/107C12Q2521/107C12Q2527/101C12Q2527/113
Inventor 罗鸿斌
Owner SHENZHEN KANGMEI BIOTECH
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