Detection primer set for reverse transcription loop-mediated isothermal amplification of Noroviruses, detection method and kit
A loop-mediated isothermal, detection primer technology, applied in the biological field, can solve the problems of inability to apply large-scale pathogen screening and detection, large-scale expensive equipment, cumbersome and time-consuming operation, etc., to achieve enhanced specificity, sensitive detection, Highly sensitive effect
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Embodiment 1
[0035] 1. Materials
[0036] 1.1 NV strains and control strains
[0037] Norovirus (NV) strains were isolated from various places in Guangdong Province. Enteroviruses (Enteroviruses), Rotavirus (Rotavirus, RV), Astrovirus (Astrovirus, AstV), are kept by the laboratory.
[0038] 1.2 Main reagents
[0039] BstDNA polymerase (8U / μL) and supporting buffer are products of NEB; AMV reverse transcriptase (5U / μL), HRP RNase inhibitor (40U / μL) and corresponding buffer, ExTaq DNA polymerase (5U / μL) , dNTPs (2.5mMeach), BamHI (15U / μL), DNAMarkerDL2000, RNAasefreeH2O are all TaKaRa products. RNA extraction reagent TRIzolReagent (TaKaRa); betaine betaine (Sigma); 10000 × SYBRGreen I (Biotech Co., Ltd.); penicillin and streptomycin (BBI); agarose (BIOWEST).
[0040] PBS buffer solution (pH7.2): KH2PO40.2g, Na2HPO4·12H2O2.85g, NaCl8g, KCl0.2g add ultrapure water to 1000mL.
[0041] 50×TAE: Tris base 242g, Na2EDTA 37.2g, glacial acetic acid 57.1mL, add ultrapure water to make up to 1000m...
Embodiment 2
[0067] Example 2: Sensitivity and specificity experiments of RT-LAMP
[0068] 1. Take the above 200 μl norovirus (NV) total RNA, and then dilute it by 10 times. Take 1 μl template for each dilution, and follow the following reaction system: 10×buffer 2.5 μL, dNTPs (10 mM) 3 μL, FIP ( 10 μM) 2 μL BIP (10 μM) 0.5 μL, F3 (10 μM) 0.5 μL, B3 (10 μM) 2 μL, MgSO 4 (25mM) 2μL, Betaine (0.4M) 2.5μL, BstDNA polymerase 1μL, AMV reverse transcriptase 0.25μL, extracted total RNA (norovirus total RNA) 1μL, deionized water to make up to 25μL, the reaction conditions are: Incubate at 64°C for 40 min and perform RT-LAMP to judge the sensitivity. RNAasefreeH2O was used as a negative control.
[0069] 2. Comparative experiment:
[0070] In order to compare the sensitivity and specificity of RT-LAMP amplification, the One-step RT-PCR one-step kit was used simultaneously with the RT-LAMP method.
[0071] According to the kit instructions, the 50 μl reaction system contains 0.4 μM F3 and B3 pri...
Embodiment 3
[0075] Example 3: Specificity of RT-LAMP
[0076] Extract 20 RNAs of norovirus, enteroviruses (EV), rotavirus (RV) and astrovirus (Astrovirus, AstV) from different sources, and obtain 20 total RNAs of norovirus, enterovirus Dowvirus total RNA, rotavirus total RNA and astrovirus total RNA.
[0077] Respectively according to the following reaction system: 10 × buffer 2.5μL, dNTPs (10mM) 3μL, FIP (10μM) 2μL, BIP (10μM) 0.5μL, F3 (10μM) 0.5μL, B3 (10μM) 2μL, MgSO 4 (25mM) 2μL, Betaine (0.4M) 2.5μL, BstDNA polymerase 1μL, AMV reverse transcriptase 0.25μL, extracted total RNA (norovirus total RNA, enterovirus total RNA, rotavirus total RNA or star Virus total RNA) 1 μL, made up to 25 μL with deionized water, and the reaction conditions were as follows: incubate at 64°C for 40 min, and perform RT-LAMP. RNAasefreeH2O was used as a negative control.
[0078] The result is as Figure 7 As shown, norovirus is positive and can be detected, while enterovirus total RNA, rotavirus total RN...
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