A method for designing a CRISPR-induced RNA library
A design method and library technology, applied in genomics, instrumentation, sequence analysis, etc., can solve the problems of impracticality and high computational cost
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[0038] The present invention will be further described below in conjunction with examples.
[0039] This embodiment provides a method for designing a CRISPR-induced RNA library, which specifically includes the following steps:
[0040] Step 1: Determine the targetable genomic space in parallel.
[0041] In order to generate the induced RNA library desired by the user, the method also allows the user to input the reference genome FASTA file, the length of the induced RNA, the standard PAM (protospacer adjacent motif), the PAM position relative to the induced RNA target sequence, non- Standard PAM, and Hamming distances M and Q. Such as figure 1 As shown in (b, c), based on the parameters given by the user, the algorithm scans the kmer prefixed or suffixed by standard PAM and non-standard PAM in the reference genome, as well as related information, such as its corresponding coordinates and directions (used to record kmer in position and encoding direction in a reference seque...
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