Gene-regulating compositions and methods for improved immunotherapy
A gene regulation and target gene technology, applied in biochemical equipment and methods, chemical equipment and methods, translation products of oncogenes, etc.
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Embodiment 1
[0519] Example 1: Materials and methods
[0520] The experiments described here utilize the CRISPR / Cas9 system to modulate the expression of one or more endogenous target genes in different T cell populations.
[0521] I. Materials
[0522] gRNA: All experiments used single-molecule gRNA (sgRNA) unless otherwise stated. Double gRNA molecules were used as indicated and prepared by mixing 200 μM tracrRNA (IDT cat. no. 1072534) with 200 μM target specificity in nuclease-free duplex buffer (IDT cat. crRNA(IDT) was double-stranded for 5 min to form 100 μM tracrRNA:crRNA duplexes, where tracrRNA and crRNA were present in a 1:1 ratio. The targeting sequences of the gRNAs used in the following experiments are provided in Table 10 below.
[0523] Table 10: Experimental gRNA targeting domain coding sequence
[0524]
[0525] Cas9 : Express Cas9 in target cells by introducing Cas9 mRNA or Cas9 protein. Unless otherwise stated, the mRNA encoding Cas9 comprising the nuclear local...
Embodiment 2
[0545] Example 2: Characterization of Edited Receptor Engineered T Cells
[0546] Experiments were performed to purify edited receptor-expressing cells based on CD3 cell surface expression. Prior to engineering, CD8+ T cells express the CD3 molecule on the cell surface as part of a complex containing the TCRα / β chain ( Figure 4A ). T cells were transduced with lentivirus expressing CAR, a guide RNA targeting the TRAC gene, and a guide RNA targeting the B2M gene, which were used to assess editing of non-TCR genes as a surrogate for on-target gene editing. Following lentiviral transduction and Cas9 mRNA electroporation, successfully transduced and edited T cells exhibited loss of surface CD3 expression due to editing of the TRAC gene, and loss of HLA-ABC expression due to editing of the B2M gene ( Figure 4B ). CD3-expressing cells were isolated from a large population using the EasySep Human CD3 Positive Selection Kit (StemCell Tech Cat. No. 18051) ( Figure 4B ). Ce...
Embodiment 3
[0550] Example 3: Via OT1 / B16-O VA CRISPR / C AS 9 Functional genomic screens identify targets for adoptive T cell transfer therapy
[0551] Experiments were performed to identify targets that modulate T cell accumulation in tumors. Pooled CRISPR screens were performed in which each sgRNA pool targeting a single gene was introduced into a population of tumor-specific T cells such that each cell in the population contained a single sgRNA targeting a single gene. To determine the effect of specific genes on T cell accumulation in tumor samples, the frequency of each sgRNA in the T cell population was determined at the beginning of the experiment and compared to the frequency of the same sgRNA at a later time point in the experiment. The frequency of sgRNAs targeting genes that positively regulate T cell accumulation in tumor samples (e.g., genes that positively regulate T cell proliferation, viability, and / or tumor infiltration) are expected to increase over time, while those t...
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