Prediction system for predicting occurrence of calcium oxalate kidney stone
A prediction system and technology for kidney stones, applied in the field of neural network, can solve the problems of calcium oxalate kidney stone prediction system, etc., and achieve the effect of accurate prediction effect.
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Embodiment 1
[0036]Example 1. The prediction method of the present invention for predicting the occurrence of calcium oxalate kidney stones
[0037]The present invention combines 3 clinical indexes and 4 bacterial genus indexes to establish a prediction model to predict the occurrence of calcium oxalate kidney stones.
[0038]The three clinical indicators are: gender, oxalic acid concentration in urine and acetic acid concentration in feces;
[0039]The 4 genus indicators are:
[0040]g__Geobacter_f__Geobacteraceae_o__Desulfuromonadales_c__Deltaproteobacteria_p__Proteobacteria (abbreviated as g__Geobacter) relative abundance value,
[0041]relative abundance value of g__Kroppenstedtia_f__Thermoactinomycetaceae_o__Bacillales_c__Bacilli_p__Firmicutes (abbreviated as g__Kroppenstedtia),
[0042]g__Sphaerochaeta_f__Spirochaetaceae_o__Spirochaetales_c__Spirochaetia_p__Spirochaetes (abbreviated as g__Sphaerochaeta) relative abundance value,
[0043]The relative abundance value of g__Oscillospira_f__Ruminococcaceae_o__Clos...
Embodiment 2
[0051]Example 2: Using random forest model to predict the occurrence of calcium oxalate kidney stones
[0052]Call the randomforest package and use the presence or absence of kidney stones in 123 samples (57 cases of kidney stone patients and 66 cases of healthy people) as the category label, and use 5-fold cross-validation to divide the 123 samples into 5 subsets, and randomly select 1 subset as Test, the remaining 4 as training. Enter the Y value and gender of the 4 subsets, the concentration of oxalic acid in urine, the concentration of acetic acid in feces, and the relative abundance values of g__Geobacter, g__Kroppenstedtia, g__Sphaerochaeta and g__Oscillospira, call the randomForest() function, and use the default parameter ntree=500, importance =FALSE, localImp=FALSE, nPerm=1, replace=TRUE, oob.prox=proximity, norm.votes=TRUE, do.trace=FALSE, build a random forest model. Enter the gender of a subset, the concentration of oxalic acid in urine, the concentration of acetic acid i...
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