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Machine learning using distance-based similarity labels

A distance, computerized technique, applied in the fields of digital pathology, image analysis, capable of solving problems such as reduction, size and quality training dataset processing and resolution, inconsistency in MLM prediction accuracy annotations, etc.

Pending Publication Date: 2021-10-29
F HOFFMANN LA ROCHE & CO AG
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Therefore, the predictive accuracy of MLMs trained on such inconsistent training datasets may be degraded by a large part of "annotation inconsistency / annotation noise"
[0008] For the above reasons, the lack of annotated training datasets of sufficient size and quality is the main reason why many open biomedical problems cannot be addressed and solved by machine learning algorithms already available today

Method used

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  • Machine learning using distance-based similarity labels
  • Machine learning using distance-based similarity labels
  • Machine learning using distance-based similarity labels

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Experimental program
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Effect test

Embodiment approach

[0035] According to an embodiment, the method comprises: selecting a starting tile from a plurality of tiles; generating a first set of tile pairs using a first spatial proximity threshold, wherein two maps of each tile pair in the first set The two tissue regions delineated by the tiles are separated from each other by a distance less than a first spatial proximity threshold, and wherein each pair of tiles in the first set includes the starting tile; a second set of tiles is generated using a second spatial proximity threshold pairs, wherein the two tissue regions delineated by the two tiles of each tile pair in the second set are separated from each other by a distance greater than a second spatial proximity threshold, and wherein each tile pair in the second set includes a starting tile; selecting a different starting tile from a plurality of tiles; and repeatedly generating a first set of tile pairs, generating a second set of tile pairs and selecting a different starting t...

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PUM

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Abstract

The invention relates to a computer-implemented self-supervised learning method for digital pathology. The method comprises: Receiving (102) a plurality of digital images each depicting a tissue sample; Splitting (104) each of the received images into a plurality of tiles; automatically generating (106) tile pairs (312, 313, 314, 315, 422), each tile pair having assigned a label (403) being indicative of the degree of similarity of two tissue patterns depicted in the two tiles of the pair, wherein the degree of similarity is computed as a function of the spatial proximity (d1, d2, d3, d4) of the two tiles in the pair, wherein the distance positively correlates with dis- similarity; and training a machine learning module - MLM - (400, 402, 403, 600) using the labeled tile pairs as training data to generate a trained MLM, the trained MLM being adapted for performing an image analysis of digital histopathology im- ages.

Description

technical field [0001] The invention relates to the field of digital pathology, in particular to the field of image analysis. Background technique [0002] Computational analysis of digital tissue images in the field of digital pathology has a wide range of important biomedical applications, such as tissue detection, segmentation, morphometry, identification and classification of diseases (eg, cancer) and possible treatment options. Currently, machine learning methods are used to address the complexity and variety of image analysis problems. [0003] Typically, supervised machine learning methods are used to solve image analysis problems. Therefore, a machine learning module (MLM) is trained on a set of training images labeled as ground truth by domain experts (especially pathologists and clinicians). During the training phase, the statistical model of the MLM learns to map the relevant image features computed by the image analysis algorithm to the labels contained in the ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): G06K9/00G06K9/46G06K9/62G06N3/04G06N3/08G06T7/00G16H30/40G06V10/764
CPCG06T7/0012G06N3/084G16H30/40G06T2207/20081G06T2207/20084G06T2207/30024G06V20/695G06V20/698G06V10/454G06V2201/03G06V10/82G06V10/761G06V10/764G06N3/045G06F18/22G06V10/7747
Inventor E·克莱曼J·吉尔登布拉特
Owner F HOFFMANN LA ROCHE & CO AG