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Detection primer group, detection kit, and detection method used for simultaneous detection of three pathogenic bacteria of marine fishes

A technology for detection kits and detection primers, applied in biochemical equipment and methods, recombinant DNA technology, microbiological determination/inspection, etc., can solve the problems that cannot meet the timely diagnosis, sensitivity and specificity, low detection sensitivity, and delayed disease. Diagnosis and other issues to achieve the effect of reducing the risk of disease outbreaks, rapid pathogen detection, and reducing labor costs

Inactive Publication Date: 2016-05-25
SOUTH CHINA SEA FISHERIES RES INST CHINESE ACAD OF FISHERY SCI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0006] Based on the existing technology, the detection of pathogenic bacteria in aquatic animals mostly adopts methods such as isolation, cultivation and identification of disease-like bacteria. The operation process is complicated, time-consuming, and the detection sensitivity is low. The result is uncertain and often delays the diagnosis of the disease.
In response to sudden disease events, it cannot meet the requirements of timely diagnosis, high sensitivity and specificity, accurate test results, and a large number of samples.
For the rapid detection of Nocardia spp., Vibrio harveii and Streptococcus iniae, domestic and foreign scholars have established bacterial culture identification and PCR detection methods for single pathogenic bacteria. However, in the process of seawater aquatic animal breeding, the In the prevention and control of related diseases, the sample size is large and the time is tight, and it is necessary to quickly detect multiple pathogenic bacteria at the same time, but a single pathogenic bacteria PCR detection method or a general bacterial isolation method cannot meet the above requirements

Method used

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  • Detection primer group, detection kit, and detection method used for simultaneous detection of three pathogenic bacteria of marine fishes
  • Detection primer group, detection kit, and detection method used for simultaneous detection of three pathogenic bacteria of marine fishes
  • Detection primer group, detection kit, and detection method used for simultaneous detection of three pathogenic bacteria of marine fishes

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0039] The extraction of embodiment 1 bacterial genome DNA

[0040] Nocardia, Vibrio harveylius and Streptococcus iniae were collected from yellowtail (self-preserved in the Fishery Biological Diseases Laboratory of South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences), and the DNA was extracted by the following steps:

[0041] (1) Resuspend the bacteria with 500-550 μL of TE buffer;

[0042] (2) Add 30 μL of 10% SDS and 15 μL of proteinase K (20 mg / mL) to the solution resuspended in step (1), mix well and incubate at 37° C. for 1 h;

[0043] (3) Add 100 μL of 5mol / L NaCl solution to the solution incubated in step (2), mix well and then add 80 μL of NaCl solution of LCTAB (dissolve CTAB in 0.5mol / L of NaCl solution, CTAB and all The mass volume ratio of the above NaCl solution is 1:20), and incubated at 65°C for 20min;

[0044] (4) Add phenol-chloroform-isoamyl alcohol (the volume ratio of phenol, chloroform and isoamyl alcohol is 25:24 to the so...

Embodiment 2

[0048] Example 2 Design and Effectiveness Detection of Primer Sets for Triple PCR Detection of Yellowtail Nocardia, Vibrio Harvey and Streptococcus iniae

[0049] 1. Select the specific genes of Nocardia japonica, Vibrio harveylius and Streptococcus iniae respectively, and use PrimerPremier5.0 software to analyze and design corresponding primer pairs. Each primer pair can specifically identify the above-mentioned bacteria respectively specificity, the primer sequences are as follows:

[0050]

[0051]

[0052] 2. Effectiveness testing:

[0053] (1) Synthesize the primer set of above-mentioned design, use the primer of primer set to carry out single PCR verification respectively to the DNA of Nocardia japonica, Vibrio harveylius and Streptococcus iniae that embodiment 1 extracts, and wherein single PCR reaction system is as follows :

[0054]

[0055] (2) Simultaneously perform triple PCR verification on Nocardia spp., Vibrio harveii and Streptococcus iniae, using th...

Embodiment 4

[0067] Embodiment 4 detection kit

[0068] The detection kit of this embodiment can be used for rapid diagnosis of triple PCR whether the sample contains Nocardia japonica, Vibrio harvei and Streptococcus iniae. Primer set for detection of Streptococcus iniae, proteinase K, SDS solution, phenol-chloroform-isoamyl alcohol mixed solution, isopropanol, ethanol with a volume concentration of 70%, TE buffer solution, NaCl solution of CTAB, positive control substance and PCRDsMix consists of:

[0069] (1) Primer set for detection of Nocardia spp., Vibrio harveii and Streptococcus iniae: 1 tube contains primers Ns-mceF and Ns-mceR for Nocardia spp., the nucleotide sequences of which are shown in SEQ ID NO. 1 and shown in SEQIDNO.2; Vibrio Harvey primers Vh-toxF and Vh-toxR are installed in 2 tubes, and their nucleotide sequences are shown in SEQIDNO.3 and SEQIDNO.4 respectively; Streptococcus iniae primer Si- The nucleotide sequences of itsF and Si-itsR are respectively shown in SE...

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Abstract

The invention discloses a detection primer group, a detection kit, and a detection method of nocardia seriolae, vibrio harveyi, and streptococcus iniae. The detection primer group comprises a primer pair Ns-mce, a primer pair Vh-tox, and a primer pair Si-its; the nucleotide sequences of the primer pairs are represented by SEQ ID NO.1-6. The detection kit comprises above detection primer group. According to the detection method, the detection kit is used for detection; samples are subjected to pretreatment, genome DNA is extracted as sample group DNA, and PCR is adopted to detect the samples. A triplex PCR detection method is established for tracking measurement of nocardia seriolae, vibrio harveyi, and streptococcus iniae at different periods, avoiding transmission of pathogenic bacteria, and improving rapid inspection and quarantine of pathogenic bacteria in aquatic products; and the invention belongs to the field of aquatic cultured animal pathogenic bacteria detection.

Description

technical field [0001] The invention belongs to the field of detection of pathogenic bacteria in aquaculture animals, and in particular relates to a detection primer set, a detection kit and a detection method for Nocardia spp., Vibrio harveii and Streptococcus iniae. Background technique [0002] Nocardiaseriolae, Vibrioharveyi, and Streptococcusiniae are three common pathogenic bacteria in mariculture fish, of which Nocardiaseriae and Streptococcus iniae belong to Gram positive bacteria, and Vibrio harveii is a Gram-negative bacteria. These three bacteria are widely distributed in the marine environment and aquaculture environment, and can be transmitted through bait, water environment, etc. They have certain differences in biological characteristics and pathogenicity, but they can all cause a large number of deaths of a variety of aquaculture animals , causing severe economic losses to the aquaculture industry. [0003] Yellowtail Nocardia can grow at 25-40°C, the optim...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12N15/11C12Q1/68
Inventor 苏友禄冯娟孙秀秀郭志勋马红玲
Owner SOUTH CHINA SEA FISHERIES RES INST CHINESE ACAD OF FISHERY SCI
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