The invention belongs to the technical field of port animal
quarantine, and discloses an imported
animal skin pathogenic microorganism rapid early warning method based on metagenome sequencing, and the method comprises the following steps: optimization pretreatment of an imported
animal skin sample: taking the imported
animal skin sample, carrying out sterile
grinding to prepare a homogenate, and carrying out
spray drying on the homogenate; carrying out
nucleic acid enrichment by combining
protease K +
lysozyme composite enzymolysis with a
magnetic bead method; carrying out metagenome sequencing and
bioinformatics analysis; performing
biological safety risk research, judgment and early warning: performing risk grading on pathogens and generating early warning information on the basis of an analysis result in the step S2 and in combination with an imported non-edible
animal product monitoring technical table; efficient and accurate detection of target pathogens: aiming at the high-risk pathogens early-warned in the step S3, developing a standardized detection
reagent by adopting at least one technology of
CRISPR / Cas, recombinant RPA and digital PCR, and carrying out targeted
verification detection on the sample. The sample pretreatment is adaptive to the characteristics of animal
skin, so that the enrichment efficiency of pathogenic
nucleic acid is improved; a multi-technology detection
system is combined, and the requirements of'broad-spectrum early warning 'and'accurate
verification' are considered;
technical support is provided for port animal
quarantine, and
biological safety hazards are effectively prevented and controlled.