The invention relates to the field of high-performance computer value 
simulation technology and discloses a 
particle model-oriented multi-layer direct-connecting cluster parallel computer 
system. The 
system comprises a plurality of nodes; the nodes are arranged into one-dimensional or multi-dimensional array of a layer or multiple 
layers in logic; communication connection can be directly carried out between the adjacent nodes on the same layer, thus realizing the high-speed 
data transmission between the adjacent nodes on the same layer and the communication connection between nodes on different 
layers through an exchanger. The invention simplifies the design of the high-performance computer 
system, increases the calculation rate of the high-performance computer system on the 
particle method and similar calculations, and avoids the conflict between the communication and the memory access, thus fully overlapping the calculation and the communication operation of the nodes, allowing the calculation to gradually advance towards the sequential time from the 
peripheral area corresponding to the nodes to the center and further effectively relieving the small-scaled load fluctuation.