Compositions and method for storage of nucleic acid from bodily fluids

a nucleic acid and body fluid technology, applied in the field of compositions and methods for the isolation and storage of nucleic acids from bodily fluids, can solve the problems of blood as a source, multiple steps that can be time-consuming and expensive, and the typical content of dna source materials

Inactive Publication Date: 2010-10-28
DNA GENOTEK
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, a limitation of PCR is that DNA source materials typically contain a variety of inhibitors, such as pigments, proteins, saccharides and / or other impurities that interfere with the amplification reaction.
However, purification procedures often involve multiple steps that can be time-consuming and expensive.
However, the use of blood as a source of DNA has many disadvantages.
Furthermore, it is an invasive procedure, which frequently causes a degree of distress and pain to the donor.
However, a finger prick is still an invasive procedure and haeme derived from haemoglobin in red blood cells can inhibit some types of DNA analysis.
Once collected, the time that useable DNA can be recovered is relatively short.
Forensic use is typically limited to victim or suspect identification, using the small amounts of DNA from saliva that may recovered at a crime scene or from the back of a postage stamp.
Estimates of the quantity of DNA recovered were based upon light absorption at 260 nm, a procedure known to be an unreliable method since other common biological macromolecules, such as RNA, have essentially the same ultraviolet light absorption spectrum.
The authors commented that the amount of DNA available for amplification in crude saliva may not account for all of the DNA present in saliva samples, where a quantity of the total DNA may still reside within buccal cells or be too degraded to permit target amplification.

Method used

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  • Compositions and method for storage of nucleic acid from bodily fluids
  • Compositions and method for storage of nucleic acid from bodily fluids
  • Compositions and method for storage of nucleic acid from bodily fluids

Examples

Experimental program
Comparison scheme
Effect test

example 1

Protocol for Obtaining Saliva Samples from Subjects Capable of Following Instructions

[0055]The subject is instructed to wait for a period of 30-60 minutes before last eating. The subject will brush his teeth without using toothpaste, if possible. The subject will rinse his / her mouth with 50 ml of cool or tepid water. The subject will be requested to wait for 2 minutes to allow the mouth to clear of water, then spit saliva into the special collection tube until the level of saliva reaches the 1 ml mark. Waiting after last eating and rinsing the mouth is desirable but not essential. Collection of saliva may take several minutes. If the subject finds that he / she is unable to deliver sufficient saliva, he / she will be given a few grains of table sugar to chew, and told not to be concerned if some of the sugar is spit into the tube.

[0056]Where two or more samples are to be taken from a donor for purposes of comparing two compositions, the donor is asked to deliver small amounts of saliva ...

example 2

Stability of DNA in Saliva and PCR Amplification of Saliva-Derived DNA with a Heating Step

Method

[0058]Saliva was collected from a single donor, using the protocol described in Example 1, and individual samples of the saliva were mixed 1:1 with a solution consisting of 20 mM CDTA; 400 mM NaOAc (sodium acetate); 200 mM Tris-HCl, 0.05% SDS (sodium dodecyl sulfate); pH adjusted to 8.0. 20 μL of Proteinase K (1 mg / mL concentration) was then added to this mixture (10 μg / mL final concentration). The samples were vortexed, and then allowed to sit at room temperature (approximately 24° C.). At Day 1, Day 14, and Day 365, 2 μl of the saliva / solution sample was added directly to a standard 50 μl PCR reaction following incubation for 1 hour at 60° C.

PCR Conditions

[0059]PCR reactions were performed in an Eppendorf Mastercycler™ gradient PCR machine. The total reaction volume was 50 μL. Each reaction contained Invitrogen PCR Mastermix plus Tris-HCl (pH 8.0, 10 mM final concentration), MgCl2 (2 mM...

example 3

Stability of DNA in Saliva and PCR Amplification of Saliva-Derived DNA

Method

[0063]Saliva was collected from a single donor, using the protocol described in Example 1, and individual samples of the saliva were mixed 1:1 with each of the following solutions:[0064]water[0065]100 mM NaOH (sodium hydroxide)[0066]100 mM KOH (potassium hydroxide)[0067]200 mM Na2CO3 (sodium carbonate)

[0068]The samples were vortexed and allowed to sit at room temperature (approximately 24° C.). At Day 1, Day 7, Day 14, Day 21, and Day 365, 2 μl of the saliva / solution sample was added directly to a standard 50 μl PCR reaction.

PCR Conditions

[0069]PCR reaction conditions were the same as in Example 2. Thermocycling conditions were the same as in Example 2.

Agarose Gel Electrophoresis

[0070]Agarose gel electrophoresis was performed as described in Example 2.

SUMMARY

[0071]As can been seen in FIG. 2, DNA from saliva was stable and usable for PCR when mixed 1:1 with 100 mM NaOH, 100 mM KOH and 200 mM Na2CO3, and store...

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Abstract

The present invention provides an aqueous composition comprising SDS, Cyclohexanediamine tetraacetate, Tris-HCl and proteinase K for the extraction of nucleic acid from a sample of bodily fluid, such a saliva, wherein the extracted nucleic acid is stable for at least fourteen days at room temperature The composition permits direct use of the extracted and stored DNA in an amplification reaction without further processing.

Description

FIELD OF THE INVENTION[0001]The field of the invention generally relates to compositions and methods for isolation and storage of nucleic acids from bodily fluids, such as saliva, for detection of nucleotide sequences. More specifically, the invention relates to compositions and methods that do not require a separate step for extraction of nucleic acids prior to use in nucleic acid amplification reactions.BACKGROUND[0002]Molecular-based techniques involving the amplification of nucleic acids are increasingly being used in forensics, law enforcement, the military, human medicine, veterinary medicine, and research. In forensic, military and mass disaster situations, for example, DNA samples are now routinely taken from living persons thought to be relatives of unidentified victims of accident or foul play, to aid in identification of the dead. Military personnel or other individuals who expect to encounter hazardous situations where their lives may be at risk may wish to store DNA sam...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C12P19/34C12N9/50
CPCC12Q1/6806C12N15/1003
Inventor BIRNBOIM, CHAIM H.JACKSON, ADELEIWASIOW, RAFALCHARTIER, JOANNELEM, PAUL
Owner DNA GENOTEK
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