her2 gene fluorescence in situ hybridization probe and its preparation method and application

A fluorescence in situ hybridization and probe technology, used in biochemical equipment and methods, DNA preparation, DNA/RNA fragments, etc., can solve the problem of uncertain number of probe fluorescence, low probe specificity, and lack of small fragmentation and other problems to achieve the effect of reducing background interference, increasing hybridization efficiency, and reducing hybridization time

Active Publication Date: 2022-02-18
广州简册生物技术有限公司
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Problems solved by technology

However, there are some non-specific sequences in the BAC and PCR product probes, the probe specificity is not high, and the signal background is high
Existing probe fragments are generally too large, generally between 200-500nt in length, lack of effective methods for small fragmentation, low hybridization efficiency, and long hybridization time
Moreover, when the probe is labeled with fluorescence, the fluorescence is randomly added, so the number of fluorescence of each probe is uncertain, resulting in large differences in each batch.

Method used

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  • her2 gene fluorescence in situ hybridization probe and its preparation method and application
  • her2 gene fluorescence in situ hybridization probe and its preparation method and application
  • her2 gene fluorescence in situ hybridization probe and its preparation method and application

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preparation example Construction

[0029] The preparation method of the HER2 gene fluorescence in situ hybridization probe of one embodiment, comprises the steps:

[0030] Step 1: Construction of the probe library: Select the non-repetitive target gene region on chromosome 17 of the human genome containing the HER2 gene, and construct a single-stranded fragment of 35nt-200nt in length that is completely complementary to the target gene region every 1-10bp as Candidate probes are compared by BLAST to obtain the Tm value of non-specific hybridization, remove the non-specific Tm value for candidate probes at 45°C, and select non-overlapping candidate probes. Add the amplification primer fragments to obtain the target probe library.

[0031] The target gene region in this embodiment is a non-repeating region of the genome, and by designing candidate probes for the non-repeating region, non-specific reactions and background interference can be reduced.

[0032] For different target gene regions, construct candidate...

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Abstract

The invention discloses a HER2 gene fluorescence in situ hybridization probe as well as its preparation method and application. The preparation method of the HER2 gene fluorescence in situ hybridization probe of the present invention and the HER2 gene fluorescence in situ hybridization probe prepared by the preparation method are specially designed for non-repeated regions of the genome, which can reduce non-specific reactions and background interference; construction The probe is single-stranded DNA. Compared with double-stranded probes such as traditional BAC or PCR products, it can reduce the pairing of the probe with itself and increase the hybridization efficiency; and the constructed single-stranded DNA probe fragments are small and can be processed more quickly Binds to targeting sequences and reduces hybridization time.

Description

technical field [0001] The invention relates to the field of molecular biology detection, in particular to a HER2 gene fluorescence in situ hybridization probe and a preparation method and application thereof. Background technique [0002] Fluorescence in situ hybridization (FISH) is based on known population-specific DNA sequences, uses fluorescently labeled DNA fragments as probes, and hybridizes with DNA molecules in the cell genome to detect the existence and abundance of the specific DNA. Spend. The basic principle of FISH is to label DNA (or RNA) probes with special nucleotide molecules, and then directly hybridize the probes to chromosomes or DNA fiber slices, and then use monoclonal antibodies conjugated to fluorescein molecules to interact with the probes. Qualitative, localization, and relative quantitative analysis of DNA sequences on chromosomes or DNA fiber slices by specific binding of needle molecules. FISH has the advantages of safety, rapidity, high sensit...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/6841C12Q1/6811C12N15/11C12N15/10
CPCC12Q1/6811C12Q1/6841
Inventor 李怡
Owner 广州简册生物技术有限公司
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