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Double-stranded and single-stranded RNA molecules with 5 ' triphosphates and their use for inducing interferon

a technology of rna molecules and triphosphates, which is applied in the field of rna molecules, can solve the problems of inability to recognize the use and advantages of rnai, and the cost can be substantial, and achieve the effect of strong, non-sequence-specific antiviral respons

Inactive Publication Date: 2006-08-10
CITY OF HOPE
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0011] The present invention is believed to be first to show that the presence of an initiating triphosphate on in vitro transcribed-RNAs can potently induce interferon α and β, as well as elicit a strong, non-sequence-specific antiviral response to viral challenge.
[0013] The present invention relates in one embodiment to a method for inducing interferon in a cell, comprising exposing or introducing into the cell an effective amount of an RNAi molecule having one or more triphosphates, preferably a 5′-triphosphate, wherein said RNAi molecule induces said interferon. The RNAi molecule also can have an anti-viral effect, and preferably, is introduced into the cell prior to viral infection, wherein the RNAi molecule inhibits or prevents viral infection. The RNAi molecule also can have other medically useful effects, such as an anti-cancer effect.
[0014] In another embodiment, the invention provides a composition for inducing interferon in a cell comprising an effective amount of an RNAi molecule having one or more triphosphates, preferably a 5′-triphosphate, wherein the RNAi molecule can induce interferon in the cell. In a preferred embodiment, the RNAi molecule can also have an anti-viral or anti-cancer effect.

Problems solved by technology

However, when synthetic siRNAs are used for gene silencing, the costs can be substantial because of variations in siRNA efficacies.
Although the anti-viral activities of interferons are well studied (Samuel, C. E., 2001), nobody has recognized in connection with RNAi the uses and advantages, as opposed to the risks, of interferon induction by RNAi molecules, independent of the RNAi effect, to provide anti-viral and other effects, such as anti-cancer effects.
Moreover, until now, nobody is believed to have discovered the role of the triphosphate, in particular the 5-triphosphate produced on RNAi molecules in vitro, for inducing interferon and eliciting anti-viral and other medically useful responses.

Method used

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  • Double-stranded and single-stranded RNA molecules with 5 ' triphosphates and their use for inducing interferon
  • Double-stranded and single-stranded RNA molecules with 5 ' triphosphates and their use for inducing interferon
  • Double-stranded and single-stranded RNA molecules with 5 ' triphosphates and their use for inducing interferon

Examples

Experimental program
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Effect test

example 1

RNAs

[0119] The chemically synthesized RNAs were purchased from Dharmacon. The T7 siRNAs were synthesized using the Silencer siRNA construction kit from Ambion according to the manufacturer's protocol. To transcribe RNA in vitro, T7 primer I (5′-TAATACGACTCACTAT A-3′ Q ID NO:15)) was hybridized with T7 primer II, which contains antisense sequence of each transcribed RNA and the tail sequence of 5′-CCCTATAGTGAGTCGTA-3′ Q ID NO:16). To make siRNA without interferon induction, the first AA was replaced by TT and included in the T7 primer II. For example, to make GFP #2 T7 (21-AA), two primers were used (5′-TTAAGCTGACCCTGAAGTTCATCCCCTATAGTGAGTCGTA-3′ (SEQ ID NO:17) and 5′-TTGATGAACTTCAGGGTCAGCTTCCCTATAGTGAGTCGTA-3′ (SEQ ID NO:18)). For the CIP, 20 U of RNAs (NEB) was added to the siRNA after DNase and RNase T1 digestion, and further incubated at 37° C. for 1 h. Final siRNAs were column-purified using conditions recommended for the Silencer siRNA construction kit.

[0120] To synthesize th...

example 2

Transfection and RNAi Assay

[0122] All transfection assays were done using Lipofectamine 2000 following the manufacturer's protocol (Invitrogen). HEK-293 cells at ninety percent confluency were transfected in 24-well plates with the reporter genes and siRNAs. 250 ng of the pLEGFP-C1 vector (Clontech) and 10 nM of each anti-EGFP siRNA were cotransfected. EGFP expression levels were determined 24 h later from the mean number of EGFP-fluorescent cells determined by fluorescence-activated cell sorting (FACS) analyses. Percentages of EGFP expression were determined relative to nonspecific controls.

[0123] For monitoring of cell death, the medium from transfected cells was changed 24 h after transfection. Additional media changes were made after 48 h, and the plates were examined microscopically after another 48 h incubation.

example 3

[0124] Anti-HSV-1 Assays

[0125] 60% confluent HEK-293 cells were transfected in 24-well dishes with siRNA or ssRNA using Lipofectamine 2000 (Invitrogen) according to the manufacturer's protocol. The cells were placed in fresh medium 18 h after transfection. The cells were infected 6 h later with HSV-1 expressing EGFP at an MOI of 1. Cells were subject to FACS analyses 24 h after infection to determine levels of EGFP expression.

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Abstract

Double-stranded and single-stranded RNA molecules, and their use in methods for inducing interferon are provided. The interferon induction provides anti-viral and other medically useful effects, such as anti-cancer effects. Also provided are methods for reducing or inhibiting interferon induction exhibited by such molecules, particularly siRNA and shRNA molecules produced in vitro.

Description

CROSS-REFERNCE TO RELATED APPLICATION [0001] The present application is related to and claims priority under 35 U.S.C. § 119(e) to U.S. provisional patent application Ser. No. 60 / 649,537 filed on 4 Feb. 2005, incorporated herein by reference.[0002] The invention described herein was made with Government support under grant number HL074704 from NHLBI of the National Institutes of Health. Accordingly, the United States Government may have certain rights in this invention.FIELD OF THE INVENTION [0003] The publications and other materials used herein to illuminate the background of the invention, and in particular, cases to provide additional details respecting the practice, are incorporated by reference, and for convenience are referenced in the following text by author and date and are listed alphabetically by author in the appended bibliography. [0004] The present invention relates to RNA molecules, including double-stranded and single-stranded RNA molecules, and their use for induci...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): A61K48/00C12P19/34C07H21/04C07H21/00C07H21/02C12N15/11C12N15/113C12N15/117
CPCC12N15/111C12N15/1131C12N15/117C12N2310/14C12N2310/17C12N2320/30C12N2310/53C12N2330/30C12N15/113C12N15/1135C12N2310/18C12N2330/50
Inventor ROSSI, JOHNKIM, DONGHO
Owner CITY OF HOPE
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