Unicellular whole genome amplification and library construction method capable of improving coverage degree of genome

A construction method and single-cell technology, applied in the field of molecular biology, can solve problems such as unsatisfactory single-cell whole-genome amplification methods, and achieve high genome coverage

Active Publication Date: 2018-06-01
ZHEJIANG ANNOROAD BIO TECH CO LTD +2
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, in terms of genome coverage, the above three single-cell whole-genome amplification methods are not ideal, the highest is only about 60%, and there is a trend of MDA>MALBAC>DOP-PCR [4]

Method used

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  • Unicellular whole genome amplification and library construction method capable of improving coverage degree of genome
  • Unicellular whole genome amplification and library construction method capable of improving coverage degree of genome
  • Unicellular whole genome amplification and library construction method capable of improving coverage degree of genome

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Experimental program
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Effect test

Embodiment 1

[0060] (1) Single-cell gene amplification

[0061] A. Processing sorted cells:

[0062] Cells were sorted directly into 3 μL PBS in a clean bench without freeze-thawing.

[0063] B. Single-cell whole-genome amplification:

[0064] MDA was used for whole genome amplification, and Qiagen, REPLI-g Single Cell Kit was selected as the kit.

[0065] a) Prepare DLB buffer: Add 500 μL of water to the provided tube, mix thoroughly, and centrifuge briefly. DLBbuffer can be stored at -20°C for 6 months.

[0066] b) All buffers and reagents should be vortexed before use.

[0067] c) Adjust the temperature of the thermal lid of the PCR instrument to 70°C.

[0068] d) Prepare a sufficient amount of Buffer D2 (denatured buffer). Buffer D2 can be stored at -20°C for up to 3 months.

[0069] 3 μL of Buffer D2 is required for each reaction

[0070]

[0071] e) Make up the cell volume to 4 μL with PBS provided by the kit.

[0072] f) Add 3 μL Buffer D2, mix gently, and centrifuge brie...

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Abstract

The invention provides a unicellular whole genome amplification method capable of improving coverage degree of a genome and a library construction method. According to the unicellular genome amplification method, a unicellular genome is amplified with a multiple displacement amplification method; the method comprises steps as follows: a group of primers, DNA polymerase and a unicellular genome arecontacted in a solution; the solution is amplified, so that the unicellular genome is subjected to an amplification reaction, wherein the amplification time lasts for 0.5-2 h.

Description

technical field [0001] The invention belongs to the field of molecular biology, and in particular relates to a single-cell whole-genome amplification and second-generation sequencing library construction method capable of improving genome coverage. Background technique [0002] Single-cell sequencing technology (single-cell sequencing) was awarded the annual technology of "Nature Mathods" in 2013, and has broad application prospects in the fields of cancer, assisted reproduction and immunology. [0003] Single-cell genome sequencing is a technique for amplifying and sequencing the whole genome at the single-cell level. High-throughput sequencing for revealing cell population differences and cell evolution relationships. [0004] The genome of a single cell is extremely small. In order to meet the requirements of library quality control, on-machine sequencing and other detection, whole genome amplification must be performed to achieve linear or exponential growth of the geno...

Claims

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Application Information

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IPC IPC(8): C12N15/10C40B50/06C12Q1/6844
CPCC12Q1/6806C40B50/06
Inventor 梁峻彬张超洪燕刘涛玄兆伶李大为陈重建
Owner ZHEJIANG ANNOROAD BIO TECH CO LTD
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