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Detection of rare gene mutations

A mutation type and mutation site technology, which is applied in the detection/testing of microorganisms, DNA/RNA fragments, recombinant DNA technology, etc.

Pending Publication Date: 2018-10-09
陈汉奎
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Due to the limitation of sequencing chip capacity and cost, NGS is facing challenges for mutations less than 0.1%.

Method used

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  • Detection of rare gene mutations
  • Detection of rare gene mutations
  • Detection of rare gene mutations

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Embodiment Construction

[0095] The technical solutions disclosed herein are further described below through examples.

[0096] like figure 1 As shown, design the corresponding upstream forward primer, downstream reverse primer and resistance covering the mutation site according to the mutation site of the target gene to be detected. The upstream and downstream primers have no selectivity for wild type and mutant type. The blocker is designed for the wild type and has a mismatch with the mutant template. The 3'-end of the upstream primer overlaps with the 5'-end of the blocker by 2 to 6 nucleotides (nt), and the 3'-end of the blocker is blocked by PO. 4 group closed. like figure 2As shown, there is only one annealing temperature (54°C) for the primer in the first round of PCR, which is 1-5°C lower than the melting temperature (Tm-Po) of the forward primer, and the annealing time is 20s; Two annealing temperatures, one was 58°C (time 30s), for resister annealing, and the other was 54°C (time 20s...

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Abstract

The invention relates to a method for detecting rare gene mutations. The method utilizes high-selectivity gene mutation detection primers and hinders, to achieve a purpose of enriching rare mutation products by specifically inhibiting wild-type amplification. The method, the primers and the hinders in the invention are particularly suitable for efficient and low-cost detection of rare gene mutations in cfDNA according to an NGS technology.

Description

technical field [0001] This article relates to the detection of gene mutations, especially the method for selectively enriching rare gene mutations, the corresponding enrichment system, and the primers and barriers in the enrichment system. Background technique [0002] Gene mutation refers to the variation of the base sequence of genomic DNA molecules. From the molecular level, gene mutation refers to the change of base pair composition or sequence in gene structure. The study of gene mutations has become one of the hotspots in life science research today, and the detection methods have also developed rapidly. new era. However, in the high background of wild-type templates, whether it is traditional qPCR detection technology or NGS technology, the ability to detect low-level gene mutations is limited. [0003] Rare gene mutations refer to extremely rare gene mutations that exist in the background of a large number of wild gene sequences. The most common example of rare ...

Claims

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Application Information

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IPC IPC(8): C12Q1/686C12N15/11
CPCC12Q1/686C12Q2531/113C12Q2527/107
Inventor 陈汉奎刘和录覃海德
Owner 陈汉奎
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