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A method for determining the relative content of protein or polypeptide

A relative content and protein technology, applied in the field of protein or peptide quantitative analysis, can solve the problems of high cost, long test time, difficulty in adapting internal reference protein or peptide to all samples, and small detection throughput, so as to achieve small investment and rapid method establishment Simple, simple and easy-to-operate experimental procedure

Active Publication Date: 2020-12-08
WUHAN GENECREATE BIOLOGICAL ENG CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0006] In order to solve the technical defects of the traditional detection method, such as low detection throughput, high cost, long test time and difficulty in adapting to all samples for existing internal reference proteins or peptides, the present invention provides a method for determining the relative content of proteins or polypeptides

Method used

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  • A method for determining the relative content of protein or polypeptide
  • A method for determining the relative content of protein or polypeptide

Examples

Experimental program
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Effect test

Embodiment 1

[0031] 1.1 Preparation of peptide samples

[0032] The experimental samples were subjected to protein brandford quantification or cell calculation quality control. Take an equal or equal volume of samples and add them to peptide extraction lysate (8M urea / 100mM TEAB, pH 8.0, 1mM PMSF / 2mM EDTA), mix and incubate on ice for 5min, add DTT with a final concentration of 10mM was sonicated in an ice bath for 15min, then centrifuged at 13000g at 4°C for 30min, and the supernatant was transferred to a new centrifuge tube; DTT was added to the centrifuge tube to a final concentration of 10mM, and the reduction reaction was carried out in a water bath at 56°C for 30min. Get a reduced sample. Subsequently, IAM was added to a final concentration of 55 mM, placed in the dark at room temperature for 30 min for alkylation reaction, and the initial sample was obtained, treated with a 10 kD ultrafiltration tube, centrifuged at 10,000 g at 4°C for 30 min, and the permeate was collected, which w...

Embodiment 2

[0045] 2.1 Preparation of peptide samples

[0046] The experimental samples were subjected to protein brandford quantification or cell calculation quality control. Take an equal amount or volume of samples and add them to the peptide extraction lysate (8M urea / 100mM TEAB, pH 8.0, 1mMPMSF / 2mM EDTA), mix well and incubate on ice for 5min, add the final DTT with a concentration of 10mM was sonicated in an ice bath for 15min, then centrifuged at 13000g at 4°C for 30min, and the supernatant was transferred to a new centrifuge tube; DTT was added to the centrifuge tube to a final concentration of 10mM, and the reduction reaction was carried out in a water bath at 56°C for 30min to obtain Restore the sample. Subsequently, IAM was added to a final concentration of 55 mM, placed in the dark at room temperature for 30 min for alkylation reaction, and the initial sample was obtained, treated with a 10 kD ultrafiltration tube, centrifuged at 10,000 g at 4°C for 30 min, and the permeate wa...

Embodiment 3

[0058] 3.1 Preparation of peptide samples

[0059] The experimental samples were subjected to protein brandford quantification or cell calculation quality control. Take an equal or equal volume of samples and add them to peptide extraction lysate (8M urea / 100mM TEAB, pH 8.0, 1mM PMSF / 2mM EDTA), mix and incubate on ice for 5min, add DTT with a final concentration of 10mM was sonicated in an ice bath for 15min, then centrifuged at 13000g at 4°C for 30min, and the supernatant was transferred to a new centrifuge tube; DTT was added to the centrifuge tube to a final concentration of 10mM, and the reduction reaction was carried out in a water bath at 56°C for 30min. Get a reduced sample. Subsequently, IAM was added to a final concentration of 55 mM, placed in the dark at room temperature for 30 minutes for alkylation reaction, and the initial sample was obtained, treated with a 10kD ultrafiltration tube, centrifuged at 10000g, 4°C for 30 minutes, and the permeate was collected, whic...

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Abstract

The invention provides a method for determining the relative content of a protein or a polypeptide. The method comprises the following steps of carrying out pretreatment on a sample into a polypeptidesample, adding a reference peptide into the polypeptide sample, carrying out liquid chromatography-parallel reaction monitoring mass spectrometry test, using the reference peptide as a normalizationstandard of a quantitative output value of the polypeptide sample, and obtaining the relative content of the polypeptide sample relative to the reference peptide. The method has the beneficial effectsthat (1) a PRM relative quantification experiment process is simple and easy to operate, can be widely applied to conventional protein or polypeptide detection items, and does not need to take longeroptimization steps. (2) an additional reference peptide fragment is not interfered by endogenous factors of the sample, is not influenced by inaccurate expression quantity of a house-keeping proteinunder different experimental treatment conditions and is not limited by the experimental design of the polypeptide sample and the like; and (3) additional synthesis of isotopically labelled internal reference peptide fragments is not needed, and the method is quick and convenient to establish and small in investment.

Description

technical field [0001] This field is the field of protein or polypeptide quantitative analysis, and specifically relates to a method for determining the relative content of protein or polypeptide. Background technique [0002] HPLC-MS / MS targeted quantitative technology mainly refers to setting instrument parameters in a targeted manner for collection based on known or hypothetical targets, recording signals for ions that meet the settings, removing target-irrelevant signal interference, and finally through data sorting And analysis and monitoring technology to obtain quantitative results, HPLC-MS / MS targeted quantification of proteins / peptides can achieve changes in the content of target proteins / peptides in cells, tissues or organisms at a given time. [0003] Based on different detection conditions, experimental purposes and application ranges, HPLC-MS / MS targeted quantitative technologies mainly include single reaction monitoring technology (SRM), multiple reaction monit...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): G01N33/68
CPCG01N33/68
Inventor 赵海义华权高李立周璀陈亚运鲁思琴舒芹
Owner WUHAN GENECREATE BIOLOGICAL ENG CO LTD