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Novel specific molecular targets for identifying salmonella and rapid detection method thereof

A technology of Salmonella and molecular targets, which is applied in the field of microbiological testing, can solve the problems of 13 specific new molecular targets of Salmonella that have not yet been discovered, such as the PCR detection method report, and achieve the effects of practicability, short detection time and low detection cost

Active Publication Date: 2020-04-24
GUANGDONG INST OF MICROBIOLOGY GUANGDONG DETECTION CENT OF MICROBIOLOGY +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

This patented technology allows salmons bacteria like SARS-CoV-2 (severe respiratory syndrome coronavirus) to detect by specifically binding certain DNA sequences called CRISPRs or similar small genetic material onto their surface proteins. These specialized probing agents are designed to bind only one type of virus - they cannot harm other organisms' cells. By doing this, it provides an effective way to identify different types of viruses quickly and accurately while reducing costs associated therewith compared to previous testing techniques such as blood culture.

Problems solved by technology

This patented technical problem addressed in this patents relates to finding novel molecules from samples containing Salmarchiaceae or related genera like Sarcophaga gut flora, particularly those associated with severe illnesses such as gastroenteritis epidemias. Current diagnostic techniques involve testing each sample separately but they may also result in misdiagnoses because different tests only identify certain types rather well at once. There is currently lacked effective ways to quickly and accurately determine whether any particular type of organism causes disease without having multiple testings.

Method used

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  • Novel specific molecular targets for identifying salmonella and rapid detection method thereof
  • Novel specific molecular targets for identifying salmonella and rapid detection method thereof
  • Novel specific molecular targets for identifying salmonella and rapid detection method thereof

Examples

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Embodiment 1

[0034] Example 1 Mining of Salmonella Specific New Molecular Targets

[0035] Based on the GenBank database in NCBI and the whole genome DNA sequence of Salmonella self-tested by our team, comparative genomics analysis was carried out. The pan-genome analysis software Roary was used to cluster the functional genes with a similarity of 95% into the same gene cluster, and the comparison process was implemented in a localized script written in the Perl programming language. Convert the matrix file gene_presence_absence.csv generated after the pan-genome analysis into 0 / 1 format. Each column corresponds to the carrying status of the gene cluster of the strain. A value of 1 means that the gene is carried, and a value of 0 means that the gene is not carried. The unique gene fragments of Salmonella can be screened out by combinatorial sorting, and the gene sequences are shown in SEQ ID NO.1-13. The protein sequences of 13 specific genes of Salmonella strains were extracted, and comp...

Embodiment 2

[0036] Example 2 Establishment of a Rapid Detection Method for Salmonella Specific New Molecular Targets

[0037] This embodiment provides a method for detecting Salmonella: primers designed for any new specific molecular target of Salmonella obtained in Example 1 can form a rapid detection method, and include the following steps:

[0038] Design of primers: design specific amplification primers according to the above-mentioned 13 new specific molecular target base sequences SEQ ID NO.1-13, and the primer sequences are as follows:

[0039] Table 1 Salmonella specific PCR detection primer sequence

[0040]

[0041]

[0042]

[0043] DNA template preparation: Bacteria were cultured in nutrient broth, and bacterial genomic DNA was extracted using a commercial bacterial genomic DNA extraction kit as a template to be tested.

[0044] PCR detection system and amplification procedure:

[0045] The PCR detection system is 25 μL, including: 2×PCR Mix 12.5 μL, template DNA 1 ...

Embodiment 3

[0055] The detection of embodiment 3 Salmonella suspected bacterial strains

[0056] The Salmonella PCR detection method in Example 2 is used to detect 391 suspected strains of Salmonella isolated from food samples. The food samples are collected from supermarkets and bazaars in Guangdong Province. For sample processing and the isolation of suspected bacterial strains, refer to the national standard method. Using the specific molecular target, primer and detection method of the present invention, a total of 391 strains of Salmonella were detected, which was consistent with the biochemical reaction test and 16s rDNA identification results. This example illustrates that the specific target of Salmonella of the present invention and the detection primers are highly reliable.

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Abstract

The invention provides a group of molecular targets for detecting salmonella. The molecular targets comprise nucleotide sequences as shown in SEQ ID NO. 1-13. The invention also provides a group of primers for detecting the salmonella molecular targets in the claim 1, and the nucleotide sequences of the primers are shown as SEQ ID NO.14-39. The primers are adopted to perform PCR amplification on the specific targets, whether a sample contains salmonella or not is judged by detecting whether an amplification product contains a target strip or not, the detection cost is reduced, and the method is more practical; the specific molecular targets, namely 13 conservative nucleic acids, have single specificity, the detection result is specific, and the result judgment is simple.

Description

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Claims

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Application Information

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Owner GUANGDONG INST OF MICROBIOLOGY GUANGDONG DETECTION CENT OF MICROBIOLOGY
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