Method of extracting, amplifying and detecting nucleic acid in single tube based on nano microsphere

A nano-bead and nucleic acid technology, which is applied in the direction of biochemical equipment and methods, microbial measurement/inspection, etc., can solve problems such as inability to effectively reduce detection costs, many open operations, and foreign nucleic acid contamination, so as to avoid incomplete nucleic acid Effects of recycling, shortening the experimental period, and simplifying the operation steps

Inactive Publication Date: 2007-09-12
CHENGDU AITEKE BIOTECH
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0003] In fact, nucleic acid amplification detection is traditionally carried out sequentially and separately according to the above three steps (i.e. nucleic acid extraction, target nucleic acid specific amplification in vitro, and detection of amplification products), so there are some significant Disadvantages: ①Many open operations and easy contamination, including foreign nucleic acid contamination, sample cross-contamination, and nuclease contamination, etc.; ②Easy to cause nucleic acid loss and reduce detection sensitivity: including nucleic acid contamination caused by nucleic acid separation and purification operations Loss, and the nucleic acid recovered by separation and purification cannot be completely used for subsequent amplification detection; ③The measurement of "end point" directly affects the accuracy of quantification; ④The experiment period is long and manual operations are many, so the detection cost cannot be effectively reduced; ⑤Because Many influencing factors lead to poor repeatability of the experiment
[0010] The loss of the nucleic acid to be tested caused by the inability of the isolated and purified nucleic acid to be fully used for amplification and detection is particularly prominent for samples in which the target nucleic acid is only present in a small amount, such as the early detection of pathogenic infection in clinical practice; while elution and transfer The relatively time-consuming open operation is also the speed-limiting link that restricts the high-throughput of experiments

Method used

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Examples

Experimental program
Comparison scheme
Effect test

Embodiment approach

[0041] By lysing cells (such as viruses, bacteria, mammalian cells, etc.) The complex is separated from other components, and after further washing to remove the residual unnecessary components, the obtained nucleic acid-nano-microbead complex is directly mixed with the target nucleic acid amplification and real-time detection reaction system, and the target nucleic acid is detected. Specific amplification and real-time detection of amplification products.

[0042] An important aspect of the embodiment is the use of nanobeads as a carrier for the separation of nucleic acids, and the nucleic acid-nanobead complexes are directly used for amplification and detection after the formation of the nucleic acid-nanobead complexes without first going through an elution step as in traditional methods The nucleic acid is released from the nucleic acid-nanocomplex, and then the nucleic acid is amplified and detected, so that the extraction, amplification and detection of the nucleic acid a...

Embodiment 1

[0048] Example 1: Amplification and detection of human serum HIV-1 RNA in a single tube using nano glass microbeads

[0049] The reaction was carried out in a 200 μl PCR thin-walled tube (RNase Free), using porous nano glass beads as the nucleic acid separation and purification carrier, the specific amplification of the target nucleic acid and the real-time detection of the amplified product in the microplate reader, the real-time amplification of the nucleic acid For the detection method, refer to (Nucleic Acids Res. 1998; 26(9): 2150-2155.).

[0050] The samples were the sera of HIV-1 infected persons confirmed by serological testing and the sera of normal persons without HIV-1 infection. Take 100 μl of serum from each sample to be tested, mix thoroughly with 60 μl of lysate (5M guanidine isothiocyanate, 0.1MTris·HCl (pH6.4), 1% TritonX-100) in a thin-walled PCR tube, and then add nano Glass beads (400mg / mlH 2 O) 2.5 μl, fully shake and mix, let stand at room temperature f...

Embodiment 2

[0053] Example 2: Amplification and Detection of Human Serum HIV-1 RNA Using Magnetic Nanoglass Beads in a Single Tube

[0054] The reaction is carried out in a 96-well microplate plate capable of fluorescence detection, using magnetic nano glass beads as the carrier for nucleic acid separation and purification, specific amplification of target nucleic acid and real-time detection of amplified products in the microplate reader, real-time detection of nucleic acid The amplification detection method refers to (Nucleic Acids Res. 1998; 26(9): 2150-2155.).

[0055] The samples were the sera of HIV-1 infected persons confirmed by serological testing and the sera of normal persons without HIV-1 infection. Take 100 μl of serum from each sample to be tested, and mix well with 60 μl of lysate (5M guanidine isothiocyanate, 0.1M Tris·HCl (pH6.4), 1% Triton X-100) in the reaction well of the microtiter plate , and then add magnetic nano glass beads (400mg / ml H 2 O) 2.5 μl, shake gently ...

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Abstract

The invention discloses a method for detecting nucleic acid based on nano micro-bead nucleic acid extraction in a single tube, which takes nano-beads as the platform and completes extraction, amplification and detection of the nucleic acid in a single reaction. In this way, it can integrates extraction, amplification and detection to be a continuous process to ensure the extracted nucleic acid to totally participates amplification and detection, and it facilitates the high-throughput nucleic acid detection experiment. The technical program include: it releases the nucleic acid in the sample and mixes with nano-beads. The nucleic acid and nano-beads reacts to achieve nucleic acid -nano-bead complex if there is nucleic acid in the samples. The nucleic acid - nano-bead complex separates with other ingredients. The separated nucleic acid - nano-bead complex is directly used for the real-time nucleic acid amplification of the target nucleic acid detection system to make it clear whether there is specific nucleic acid sequences in the samples and determines their concentrations.

Description

technical field [0001] The present invention relates to the field of nucleic acid detection, more specifically, relates to a method of separating and purifying nucleic acid components in a sample, and then carrying out in vitro specific amplification and real-time detection thereof to clarify whether there is a target nucleic acid in the sample and to determine its concentration Methods. Background technique [0002] A problem often encountered in the fields of medicine and biology is to confirm the presence of target nucleic acids corresponding to a certain disease pathogen in a sample (such as blood from a blood donor or a sample of blood or body fluid from a patient) and to determine The concentration of the target nucleic acid. However, the target nucleic acid in the sample is usually in a small amount and exists in the sample to be tested together with various other nucleic acid sequences, so that the target nucleic acid in the sample cannot be directly detected. At p...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68
Inventor 万强郭建辉严俊周裕程
Owner CHENGDU AITEKE BIOTECH
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