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Method and apparatus for inspecting gel chip

A chip detection and gel technology, applied in biochemical equipment and methods, biological testing, material inspection products, etc., can solve the problems of unpaired probes or impurity contamination, non-charged impurities are difficult to remove, and chip sensitivity is not high , to improve signal detection sensitivity, facilitate adjustment of cleaning power, and reduce chip background

Inactive Publication Date: 2007-11-21
SOUTHEAST UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

At present, the method for improving the sensitivity of the chip detection chip is usually to perform various treatments on the chip before the chip is sampled, such as performing hydrophobic or hydrophilic treatment with a silylating reagent, so as to reduce the amount of glass slides in the reaction process. Adsorption of easily combined impurities, but it cannot fundamentally solve the problem of contamination of non-paired probes or impurities after hybridization; another measure is to process the chip after hybridization, such as using 0.1×SSC-0.1% SDS solution, Or use electrophoresis to remove unbound probes or charged impurities, etc. Although these methods can play a certain role in improving the sensitivity of the chip, the first method is for the non-specific binding of probes on the detection target. It is difficult to remove, and although the second method has a certain effect on the removal of non-specifically bound probes and charged impurities, there are still a large part of non-charged impurities that are difficult to remove
[0003] In view of the fact that the chip has been widely used in clinical and scientific research, but the chip, especially the gel chip, still has the limitation of low sensitivity. Therefore, there is an urgent need for a simple and efficient processing method and device for improving sensitivity.

Method used

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  • Method and apparatus for inspecting gel chip
  • Method and apparatus for inspecting gel chip
  • Method and apparatus for inspecting gel chip

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0018] Example 1: Using acrylamide gel chips to simultaneously immobilize PCR products of 1000 individuals to type the same SNP site

[0019] The Y (C / T) in the 5'GCTTTCTTGTTTGTTTTCCTCCTTTACCAY(C / T)CCAGAAATCCATTTGAGTCTGCTCCTTGT-3' sequence is a gene locus related to the mutation of the hyperlipidin gene (Homo sapiens dystrobrevin binding protein 1, DTNBP1). Through a pair of primers (the reverse primer has acrylamide modification), amplify a gene sequence of 1000 people containing this site by PCR, and directly mix 5-10ul of PCR products or purified products with acrylamide (acrylamide monomer and methylene acrylamide monomer), ammonium persulfate, glycerol and water to form a prepolymer, and transfer it to a 384-well plate, and spot 1000 samples on the same glass slide as a microchip by a chip spotter. array. Then the chip was baked at 80°C for 30 seconds and then taken out. The chip was placed in 0.1M NaOH solution and treated with ultrasonic waves for 10 seconds to denatur...

Embodiment 2

[0020] Example 2: Rapid processing of gel chips in gene sequencing by this method

[0021] One universal PCR reverse primer PR was modified with acrylamide, while the other forward primer PF was not modified. Mix the above reverse primer with acrylamide (acrylamide monomer and methylene acrylamide monomer), ammonium persulfate, glycerol and water to form a prepolymer, and spot it on the chip. Then place the chip in a vessel containing TEMED activator for decompression and vacuum filtration. Since TEMED volatilizes to the surface of the gel, ammonium persulfate is excited to release free radicals and the prepolymer is gelled, thereby preparing a compound containing amplification. Primers for gel microarray chips. After breaking a larger genomic DNA with ultrasonic waves, the same universal linker (complementary to the reverse primer immobilized in the gel) was connected to the two ends of each fragment respectively, and then used PCR solution ( Containing Taq enzyme, buffer, ...

Embodiment 3

[0022] Example 3: Using the device and method to process the chip on the agarose protein chip in the process of antigen antibody detection for 650 people

[0023] First melt the agarose, spread it evenly on the surface of the glass slide, treat it with sodium periodate after solidification, and clean it. Chlamydia trachomatis protein was precipitated after centrifugation from 650 human urine samples, then diluted with PBS buffer, and spotted on the chip with a spotter, and left to stand at 37°C for 30 minutes, and the chip was placed in an ultrasonic generator Sonicate for 5s and rinse with PBS. Spread the antibody with streptavidin evenly on the surface of the chip and react at 37°C for 30 minutes, sonicate for 5 s and rinse with PBS, and then mix the fluorescent Cy3 labeled with biotin with the antigen 28 of the labeled avidin antibody. Cultivate for 1 hour. Finally, the chip was placed in an ultrasonic generator and ultrasonicated for 5 seconds, rinsed with PBS, and final...

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Abstract

A method for detecting gel chip includes using deionized water to wash gel chip hybridized with probe, inserting washed gel chip into card slot of chip, placing said card slot into chip washing container for carrying out ultrasonic treatment, setting power of ultrasonic generator to be 20W when 1-10 pieces of gel chips are washed then increasing said power by 10W and making ultrasonic time be 5-30 seconds when a magnitude order of 10 pieces is washed later on, taking out said gel chips, using deionized water to wash them and using nitrogen to blow them to be dried then carrying out scanning on said gel chip.

Description

1. Technical field [0001] The invention belongs to the field of biochip detection, in particular to a method and a device for improving the detection sensitivity of a gel chip. 2. Background technology [0002] Existing technology: In the past decade, chip technology has played a pivotal role in life science research and has also brought profound impact. With the continuous deepening of interdisciplinary research, biochips have become an international research frontier and hotspot. In particular, gel chips with a three-dimensional structure have a strong ability to fix nucleic acids, and polyacrylamide gels and agarose gels have been used in the preparation of three-dimensional gel chips. As a chip that can be used in medical diagnosis, how to improve its detection sensitivity is the key to obtaining high-quality chip data, and the important factors affecting these two indicators are how to effectively remove unhybridized probes on the surface of the gel chip, It is one of...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): G01N33/48C12Q1/00
Inventor 陆祖宏潘志强李燕强肖鹏峰
Owner SOUTHEAST UNIV
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