Fast high-flux gene site-directed mutagenesis method

A high-throughput, genetic technology, applied in the field of genetic manipulation, can solve problems such as the impact of PCR amplification efficiency and mutagenesis efficiency, difficulty in gene insertion and deletion mutations, and difficult amplification of plasmid vectors, so as to save digestion steps, The effect of improving mutagenesis efficiency and shortening the experimental period

Active Publication Date: 2011-05-11
桂林精成生物科技有限公司
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, this method uses two perfectly matched primers, which have the following disadvantages: (1) the PCR amplification efficiency is low; (2) the PCR reaction has a large dependence on the quality and quantity of the template plasmid, which is shown in the need to prepare A relatively pure plasmid and a relatively large number of templates are added in the PCR reaction; (3) PCR amplification efficiency and mutagenesis efficiency are easily affected by the size of the plasmid vector, which is not easy to amplify and compare the mutagenesis efficiency of larger plasmid vectors. (4) In addition, this method is more effective for point mutations, but it is difficult to introduce large gene insertion and deletion mutations, which limits the wide application of this method
Although the method of circularizing PCR products based on homologous recombination in vivo in Escherichia coli has simple steps, this method uses a relatively long (25nt) primer overlapping region when designing mutagenic primers, and needs to introduce PCR products into Escherichia coli by electroporation In addition, it needs to optimize the reaction conditions of PCR to obtain relatively high mutagenesis efficiency

Method used

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  • Fast high-flux gene site-directed mutagenesis method
  • Fast high-flux gene site-directed mutagenesis method
  • Fast high-flux gene site-directed mutagenesis method

Examples

Experimental program
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Effect test

Embodiment 1

[0031] The gene thyA cloned on pBluescript SKII is deleted and mutated by using the method of the present invention, and a mutant plasmid with 726 nucleotides missing is successfully obtained.

[0032] 1. Construct the strain E.coli BUNDpnI expressing DNA adenine methylase deficiency of DpnI.

[0033] Design a pair of primers at both ends of the kanamycin expression unit, with a 50nt homologous region with the gene encoding DNA adenine methylase at both ends of the primers, use the plasmid pShuttle as a template, and carry out with this pair of primers The amplified PCR fragment is mediated by λ-Red recombinase to replace the gene encoding DNA adenine methylase on the E.coli BUN21 chromosome with the kanamycin gene, and the DNA adenine methylase deficiency is first obtained strains. Secondly, the PCR method is used to synthesize the gene dpnc encoding DpnI, and this gene is cloned into the temperature-sensitive plasmid pIJ790 (the replication origin of this plasmid is a tempe...

Embodiment 2

[0063] Using this method, a PvuII restriction site in pBluescript SKII-thyA was point-mutated, and a plasmid with the mutation of the restriction site was successfully obtained.

[0064] 1. Using the DpnI-expressing DNA adenine methylase-deficient strain E.coli BUNDpnI constructed in Example 1.

[0065] 2. Design partially overlapping (15nt) mutagenic primers.

[0066] Analyze the DNA sequence of pBluescript SKII-thyA, and design a pair of primers (forward mutagenesis primer F2 and reverse mutagenesis primer R2) at the site where the point mutation will be carried out. Both F2 and R2 can match the mutation site. The nucleotide sequence at the site to be mutated is also included in the pair of primers in complementary form (indicated in lowercase letters), F2 and R2 overlap 15nt at the 5' end (indicated in bold font) .

[0067] The primer sequences were designed as:

[0068] The forward primer is: 5-' AAACGACCC-3',

[0069] The reverse primer is: 5-' ACCGTAGTGA-3'

[0...

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Abstract

The invention provides a gene fixed-point induction method of high speed and high throughput, which comprises the following procedures: 1. constructing a bacterial strain expressing DNA adenine methylate enzyme shortcoming of Dpnl limiting incision enzyme; 2. analyzing the sequence of the position to be varied in the gene as necessary, designing partially overlapped (10-16 nt) PCR inducing primer; 3. expanding reversely PCR; 4. transforming directly in a chemical way by the expanded PCR product the constructed bacterial strain for expressing DNA adenine methylate enzyme shortcoming of Dpnl limiting incision enzyme. In this way, plasmid with preset variant is got by Dpnl in-body sieving. The invention can truly carry out fixed-point induction in a simple and rapid way without ordering special decorative primer, and can rapidly and easily construct varied plasmid without any treatment over PCR output (enzyme connection, out-body hybridizing, rubber recovering and out-body Dpnl digesting, etc.).

Description

technical field [0001] The invention relates to gene manipulation technology, in particular to a rapid and high-throughput PCR site-directed mutagenesis method for gene modification. It is especially suitable for constructing mutants such as gene deletion, insertion and point mutation to study the function of genes. Background technique [0002] With the completion of the genome projects of various species including the human genome project, the development of a simple and rapid site-directed mutagenesis technique to study the functions of genes and proteins has received urgent attention. At present, some companies and research institutes have developed gene site-directed mutagenesis methods. Due to the simplicity and ease of operation of PCR, the method of site-directed mutagenesis based on PCR has been favored by many researchers. Site-directed mutagenesis based on PCR mainly includes overlap extension PCR method, large primer method and inverse PCR method, etc. The fir...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12N15/09C12N1/21
Inventor 马立新李静李春华
Owner 桂林精成生物科技有限公司
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