Lung cancer prognosis prediction model and construction method and device
A technique for predicting models and constructing methods, applied in the field of biomedicine, can solve unsatisfactory problems and achieve high clinical application value
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Embodiment 1
[0055] like figure 1 As shown, in the present invention, the construction method of lung cancer prognosis prediction model comprises the following steps:
[0056] S1. Screen and download the original gene expression data and corresponding clinical survival information of 1175 lung adenocarcinoma samples from the Gene Expression Omnibus (GEO) database. The data are all from the same chip sequencing platform (GPL570). After normalizing the raw gene expression data using the MAS5 algorithm, the gene expression matrix was obtained. Samples with incomplete clinical data and overall survival time less than one month were removed, leaving 849 samples;
[0057] S2. Use the CIBERSORT deconvolution algorithm to estimate the composition of immune cells in the lung adenocarcinoma tumor and calculate their relative ratio. The calculation formula is as follows:
[0058] M=S*F
[0059] Among them, M is the gene expression matrix, S is the gene signature specific to the immune cell type, a...
Embodiment 2
[0094] This embodiment is used to verify the prognosis prediction model established in embodiment 1;
[0095] In this embodiment, the method for constructing a lung cancer prognosis prediction model includes the following steps:
[0096] S1. Screen and download the original gene expression data and corresponding clinical survival information of 576 lung adenocarcinoma samples from the Gene Expression Omnibus database. The data are all from the same chip sequencing platform (GPL96). After normalizing the raw gene expression data using the MAS5 algorithm, the gene expression matrix was obtained. Samples with incomplete clinical data and overall survival time less than one month were removed, leaving 557 samples;
[0097] S2. Use the CIBERSORT deconvolution algorithm to estimate the composition of immune cells in the lung adenocarcinoma tumor and calculate their relative ratio. The calculation formula is as follows:
[0098] M=S*F
[0099] Among them, M is the gene expression ...
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