Unlock instant, AI-driven research and patent intelligence for your innovation.

Gene data processing method and device based on CUDA (Compute Unified Device Architecture) and CUDA framework

A technology of genetic data and processing methods, applied in the fields of electronic digital data processing, multi-program device, image memory management, etc., can solve the problems of inability to maximize tasks, cumbersome processes, and inability to make full use of system resources

Pending Publication Date: 2022-03-25
BGI CLINICAL LAB (SHENZHEN) CO LTD
View PDF6 Cites 1 Cited by
  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, the process is cumbersome, the processing efficiency is low, and the utilization rate of CPU and memory is also low, which cannot maximize the execution of tasks per unit time, resulting in the problem that system resources cannot be fully utilized.

Method used

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
View more

Image

Smart Image Click on the blue labels to locate them in the text.
Viewing Examples
Smart Image
  • Gene data processing method and device based on CUDA (Compute Unified Device Architecture) and CUDA framework
  • Gene data processing method and device based on CUDA (Compute Unified Device Architecture) and CUDA framework
  • Gene data processing method and device based on CUDA (Compute Unified Device Architecture) and CUDA framework

Examples

Experimental program
Comparison scheme
Effect test

Embodiment Construction

[0028] The following will clearly and completely describe the technical solutions in the embodiments of the present application. Obviously, the described embodiments are only some of the embodiments of the present application, rather than all the embodiments. Based on the embodiments in this application, all other embodiments obtained by persons of ordinary skill in the art without making creative efforts belong to the scope of protection of this application.

[0029] Glossary:

[0030] Gene (Gene, Mendelian factor) refers to a DNA or RNA sequence carrying genetic information (that is, a gene is a DNA or RNA fragment with genetic effects), also known as a genetic factor, which is the basic genetic unit that controls traits. Genes express the genetic information they carry by directing the synthesis of proteins, thereby controlling the traits of individual organisms. Gene sequencing is a new type of genetic testing technology. It analyzes and determines the full sequence of ge...

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

PUM

No PUM Login to View More

Abstract

The invention provides a CUDA-based gene data processing method and device, equipment and a storage medium, the CUDA comprises a host end and an equipment end, the host end can send to-be-processed gene sequencing data stored in a memory to the equipment end, and the equipment end stores the to-be-processed gene sequencing data in a resource pool. The method comprises the following steps: firstly, obtaining gene sequencing data to be processed from a resource pool by a device end by adopting a Graph method, analyzing the gene sequencing data to be processed by adopting a multi-thread parallel mode to obtain a corresponding analysis result, and sending the corresponding analysis result to a host end, so that the host end obtains a gene data analysis result according to the corresponding analysis result. According to the gene data processing method, the Graph technology based on CUDA is adopted to process and analyze the gene data, GPU efficient comparison can be achieved, GPU delay is reduced, and therefore the gene data processing efficiency can be greatly improved.

Description

technical field [0001] The present application relates to the technical field of genetic data, and in particular to a CUDA-based genetic data processing method, device, CUDA framework and storage medium. Background technique [0002] With the continuous development of gene sequencing technology and the continuous promotion of genetic testing services, this method is widely used in the research and development of new species, viruses and diseases; at the same time, a large amount of gene sequencing data is pouring out, how to efficiently complete It is particularly important to analyze and process these data. [0003] At present, the commonly used genetic data analysis process is as follows: data analysts run some genetic analysis-related algorithms on the x86 CPU (Central processing unit, central processing unit) to complete the genetic data analysis. However, the process is cumbersome, the processing efficiency is low, and the utilization rate of the CPU and memory is also...

Claims

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

Application Information

Patent Timeline
no application Login to View More
IPC IPC(8): G06F9/50G06T1/60
CPCG06F9/5027G06T1/60
Inventor 杨姣博张优劲贺增泉郑淇文
Owner BGI CLINICAL LAB (SHENZHEN) CO LTD