The invention discloses a massive fragment data aggregation system for two kinds of massive fragment data. The system comprises a fragment uploading module of a client, and a cache module, a verification library module, a document storage module, a fragment receiving module, a fragment processing module, a fragment combination module and a fragment aggregation module of a server. Correspondingly, the invention also discloses a massive fragment data aggregation method. By the system and the method, a plurality of technologies such as message queuing services, memory banks, document databases, daemon processes and the like are adopted, so that the massive fragment data can be highly efficiently processed and combined; and a strict combination strategy is adopted, so that combination accuracy is ensured.