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Medicament latent adverse reaction discovery method based on neural network language model

An adverse reaction, neural network technology, applied in unstructured text data retrieval, text database indexing, molecular design, etc., can solve problems such as inability to perform feature learning quickly, unsuitable for processing large-scale data sets, and slow data processing speed. , to achieve the effect of shortening the time to update weights and vectors, fast feature learning, and avoiding information loss

Active Publication Date: 2019-05-17
NANTONG UNIVERSITY
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AI Technical Summary

Problems solved by technology

[0005] Aiming at the deficiencies of the prior art, the present invention provides a method for discovering potential adverse drug reactions based on a neural network language model, which solves the problem that the existing method for discovering potential adverse drug reactions has a slow data processing speed and is not suitable for processing large-scale data sets , and the problem of not being able to quickly perform feature learning

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  • Medicament latent adverse reaction discovery method based on neural network language model
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  • Medicament latent adverse reaction discovery method based on neural network language model

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Embodiment Construction

[0057] The technical solutions in the embodiments of the present invention will be clearly and completely described below in conjunction with the accompanying drawings in the embodiments of the present invention. Obviously, the described embodiments are only some of the embodiments of the present invention, not all of them. Based on the embodiments of the present invention, all other embodiments obtained by persons of ordinary skill in the art without creative work all belong to the protection scope of the present invention.

[0058] see Figure 1-4 , the present invention provides a technical solution:

[0059] Data acquisition and cleaning

[0060] Although FDA's AERS reports are freely available, there are many obstacles to integrating all relevant data. In order to obtain reliable results and ensure the repeatability of experiments, this method refers to the framework of OHDSI (Observational Health Data Sciences and Informatics) and puts the method of Banda et al into pr...

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Abstract

A medicament latent adverse reaction discovery method based on a neural network language model relates to the field of a medicament latent adverse reaction discovery method. The method comprises the following steps of performing data acquisition and cleaning; performing model optimization, modifying an original Skip-gram algorithm for performing characteristic extraction from the AERS report of the FDA and the DrugBank DDI dataset; extending an interaction database, selecting 5 adverse reactions kinds: kidney damage, heart toxicity, liver toxicity, blood pressure abnormity and neurotoxicity, using the five adverse reaction kinds as a Logistic regression verifying medicament and adverse reaction vector range and extending a DrugBank medicament interaction database in the range of the five kinds; performing Logistic regression and verifying a vector effect, finishing CM-TF-IDF model construction and distributed vector generation by means of Scikit-learn. The medicament latent adverse reaction discovery method based on the neural network language model settles the following problems in an existing method: relatively low data processing speed, unsuitability for processing large-scale data set and incapability of quickly performing characteristic learning.

Description

technical field [0001] The invention relates to the field of methods for discovering potential adverse drug reactions, and is a method for discovering potential adverse drug reactions based on a neural network language model. Background technique [0002] Adverse drug reaction events have always been the focus of health and medical institutions around the world. Drug clinical trials are carried out in a small range of people and special groups of people. The number of test personnel and the differences in the population cannot cover the market well. Pharmaceutical Audience. At the same time, due to the short trial period, all adverse reactions of the drug cannot be fully revealed in the clinical trial stage. The flow of drugs with unknown potential adverse drug reactions to the market will pose a threat to public health. The FDA receives reports on suspected adverse drug reaction events and mandatory reports from drug manufacturers from healthcare professionals and consume...

Claims

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Application Information

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IPC IPC(8): G16C20/50G16C20/70G06F16/31G06F16/35
CPCY02A90/10
Inventor 王理姜磊施维张远鹏
Owner NANTONG UNIVERSITY
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