Nuclease resistant polynucleotides and uses thereof

Inactive Publication Date: 2015-09-24
TRANSLATE BIO INC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0021]Also provided herein are methods of increasing the translational efficiency of an exogenous mRNA transcript. Such methods may facilitate, for example, an increase in the production of an expression product produced following translation of the mRNA polynucleotides or transcripts of the present inventions. Generally, such methods comprise a step of contacting the mRNA polynucleotide transcript with a stabilizing oligonucleotide that is complementary to the coding and/or non-coding region of the mRNA transcript under suitable conditions (e.g., high stringency conditions), thereby causing the mRNA p

Problems solved by technology

The administration of exogenous nucleic acids and polynucleotides, for example DNA vectors and plasmids, to a subject for the treatment of protein or enzyme deficiencies represents a significant advance in the treatment of such deficiencies however, the administration of such exogenous nucleic acids to a subject remains especially challenging.
Furthermore, in certain instances the integration of such exogenous polynucleotides into the host cells' genome has the potential of misregulating the expression of the host's endogenous genes and unpredictably impacting cellular activity.
Such plasmids are however, frequently characterized as having highly inefficient cellular uptake in vivo.
While in some instances, the use of recombinant proteins and enzymes may provide a means of ameliorating the symptoms of the underlying deficiency, the utility of such therapies are often limited and are not considered curative.
Furthermore, recombinant proteins or enzymes are often prepared using non-human cell lines and may lack certain post-translational modifications (e.g., human glycosylation) relative to their endogenously produced counterparts.
Recombinant protein and enzyme replacement therapies are also associated with great financial expense.
Since replacement therapie

Method used

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  • Nuclease resistant polynucleotides and uses thereof
  • Nuclease resistant polynucleotides and uses thereof
  • Nuclease resistant polynucleotides and uses thereof

Examples

Experimental program
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Example

Example 1

[0103]The present example illustrates the ability of stabilizing oligonucleotides of the present invention to enhance the production of protein when co-administered with non-denatured in vitro transcribed mRNA. Without wishing to be bound by any theory, it is contemplated that the stabilizing oligonucleotides modulate the nuclease resistance and increases the translational efficiency of mRNA polynucleotide transcripts.

[0104]To perform the instant studies, a 15-mer (2′O-Me-uracil) stabilizing oligonucleotide having a phosphorothioate backbone (MW=4965.8 g / mol) was prepared and which was designed to be complementary to the poly-A tail of an mRNA polynucleotide (MW=299605 g / mol) encoding human erythropoietin (EPO) protein. The EPO mRNA transcript was contacted with the stabilizing oligonucleotide at 0.001:1, 0.01:1, 0.1:1, 0.25:1, 1:1, 10:1 and 100:1 parts stabilizing oligonucleotide to mRNA polynucleotide. The resultant stabilized mRNA transcripts (designated “0.001”, “0.01”,...

Example

Example 2

[0106]The present example further illustrates the ability of the stabilizing oligonucleotides of the present invention to enhance the protein production by first hybridizing to a denatured single-stranded mRNA to form a stabilized mRNA before administering into cells for protein production

[0107]As described in Example 1 above, a 15-mer (2′O-Me-uracil) stabilizing oligonucleotide having a phosphorothioate backbone was prepared and which was designed to be complementary to the poly-A tail of an mRNA polynucleotide encoding human erythropoietin (EPO) protein. The EPO mRNA transcript was first denatured at 65° C. for 10 minutes, and then contacted with the stabilizing oligonucleotide at 0.001:1, 0.01:1, 0.1:1, 0.25:1, 1:1, 10:1 and 100:1 parts stabilizing oligonucleotide to mRNA polynucleotide. The resultant stabilized mRNA transcripts (designated “0.001”, “0.01”, “0.1”, “0.25”, “1”, “10” or “100”) or the untreated, denatured EPO polynucleotide control transcript (designated “U...

Example

Example 3

[0110]The instant study was performed to investigate optimal length of the stabilizing oligonucleotides of the present invention.

[0111]A 30-mer (2′O-Me-uracil) stabilizing oligonucleotide having a phosphorothioate backbone was prepared and which was designed to be complementary to the poly-A tail of an mRNA polynucleotide encoding human erythropoietin (EPO) protein. A non-denatured EPO mRNA transcript was contacted with the stabilizing oligonucleotide at 0.001:1, 0.01:1, 0.1:1, 0.25:1, 0.5:1, 1:1 and 2:1 parts stabilizing oligonucleotide to mRNA polynucleotide. The resultant stabilized mRNA transcripts (designated “0.001”, “0.01”, “0.1”, “0.25”, “0.5”, “1” or “2”) or the untreated, non-denatured EPO polynucleotide control transcript (designated “Unhybridized”) were then transiently transfected into 293T cells. The cumulative amounts of EPO protein produced and expressed by the transfected 293T cells were then measured at 24, 48, 72 and 96 hour intervals.

[0112]As illustrated...

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Abstract

The invention provides, among other things, methods of mRNA stabilizing mRNA and nuclease resistant mRNA prepared in accordance with such methods. In certain embodiments, the nuclease resistant mRNA encodes a functional protein, such as enzyme, and is characterized by its resistance to nuclease digestion, increased half-life and/or its ability to produce increased amounts of the functional protein (e.g., enzyme) encoded thereby.

Description

RELATED APPLICATIONS[0001]This application claims the benefit of U.S. Provisional Application No. 61 / 657,465, filed on Jun. 8, 2012, the disclosure of which is incorporated herein by reference.BACKGROUND[0002]The administration of exogenous nucleic acids and polynucleotides, for example DNA vectors and plasmids, to a subject for the treatment of protein or enzyme deficiencies represents a significant advance in the treatment of such deficiencies however, the administration of such exogenous nucleic acids to a subject remains especially challenging. For example, gene therapies that rely on viruses to carry and deliver exogenous polynucleotides (e.g., DNA) to host cells and that cause the integration of such polynucleotides into the host cells' genome are capable of eliciting serious immunological and inflammatory responses. Furthermore, in certain instances the integration of such exogenous polynucleotides into the host cells' genome has the potential of misregulating the expression ...

Claims

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Application Information

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IPC IPC(8): C12N15/11C07K14/505
CPCC12N15/111C12N2320/51C12N2310/3519C07K14/505C07H21/00C07H21/02C12P21/02
Inventor HEARTLEIN, MICHAELGUILD, BRAYDON CHARLESDEROSA, FRANK
Owner TRANSLATE BIO INC
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