Method and device for rna sequencing data processing

A technology for sequencing data and processing methods, which is applied in electronic digital data processing, special data processing applications, instruments, etc., and can solve problems such as incomplete information and single results

Active Publication Date: 2018-02-02
BEIJING NOVOGENE TECH CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

[0004] The purpose of the present invention is to provide a processing method and device for RNA sequencing data, so as to improve the shortcomings of existing processing methods such as single results and incomplete information

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  • Method and device for rna sequencing data processing
  • Method and device for rna sequencing data processing
  • Method and device for rna sequencing data processing

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Embodiment Construction

[0027] It should be noted that, in the case of no conflict, the embodiments in the present application and the features in the embodiments can be combined with each other. The present invention will be described in detail below with reference to the accompanying drawings and examples.

[0028] Terminology Explanation

[0029] SNP (single nucleotide polymorphism) stands for single nucleotide polymorphism;

[0030] INDEL (insert and deletion) represents insertion and deletion;

[0031] SSR (Simple Sequence Repeat) stands for simple repeat sequence;

[0032] CDS (Coding Sequence) represents the coding sequence;

[0033] RPKM (Per Kilo-base per Million) represents the number of reads per kilobase length from a gene in every million reads;

[0034] FPKM (Per Kilobase of exon model per Million mapped reads) represents the number of reads aligned to each kilobase of an exon in every million aligned reads;

[0035] NR (Non-redundant protein sequences) represents non-redundant pro...

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Abstract

The invention discloses a processing method and device for RNA sequencing data. The method includes obtaining the file path of the RNA sequencing data; obtaining a sequencing data file containing the RNA sequencing data according to the file path of the RNA sequencing data; obtaining query conditions for screening the sequencing data files, the query conditions include at least any of the following or multiple conditions: a list of gene names containing at least one gene name and the gene information label of at least one sample; querying from the sequencing data file according to the query conditions to obtain the screening results in the RNA sequencing data that meet the query conditions; outputting the RNA sequencing data that satisfies the The filter result of the query condition. By querying the RNA sequencing data according to the query conditions of interest entered by the user, it provides convenience for the diversified screening and analysis of the RNA sequencing data, so that the processing results are more diverse, the information is more comprehensive, and it has more guiding value.

Description

technical field [0001] The present invention relates to the field of sequencing data processing, in particular to a method and device for processing RNA sequencing data. Background technique [0002] Because high-throughput sequencing technology has the advantages of high throughput, low cost, and large amount of data information, more and more biological researchers choose high-throughput sequencing as a research method. However, the data obtained by sequencing is massive, and major sequencing companies have introduced various processing methods for users to choose from. The defect of single result and inability to carry out diversified analysis. [0003] Therefore, it is urgent to establish a method that can perform diversified analysis on sequencing data to provide more accurate and comprehensive analysis results. Contents of the invention [0004] The purpose of the present invention is to provide a processing method and device for RNA sequencing data, so as to impro...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): G06F19/20G06F17/30
Inventor 陈利群姜晓雪郭阳周婷婷
Owner BEIJING NOVOGENE TECH CO LTD
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