Screening method of ecdysone analogue and lead compound
A screening method and ecdysone technology, which can be used in drug reference, chemical property prediction, molecular design, etc., can solve the problems of heavy workload, blindness and high cost.
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[0104] 1) Obtain the three-dimensional structures of six EcR / USP dimers and ligand co-crystals from the Protein Data Bank, namely: Lepidoptera EcR / USP dimer and periodinone (PonA) (PDB: 1R1K) and bishydrazide BYI06830 (PDB: 1R20); Homoptera Bemisia tabaci EcR / USP dimer and PonA (PDB: 1Z5X); Coleoptera EcR / USP dimer and PonA (PDB:2NXX); Lepidoptera EcR / USP dimer and 20-hydroxyecdysone (20E)(PDB:2R40); Lepidoptera EcR / USP dimer and bishydrazides BYI08346 (PDB: 3IXP). Using the Align / Superpose module in MOE2014.08, compare and analyze the position of the ligand binding cavity of the six crystal complexes, and determine the active pocket ( figure 1 ).
[0105] 2) The Ligand interaction module in the software MOE2014.08 was used to analyze the interaction between ligands and receptors in the six crystal complexes, and the common pharmacodynamic characteristics of natural ecdysone and bishydrazide compounds were extracted. There are Thr343, Asn504, Ile339, and Trp526 in the bindi...
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