Asthma biomarker and application thereof
A biomarker and asthma technology, applied in the field of biomedicine, can solve the problems that asthma diagnosis methods cannot achieve early warning, cannot predict the onset and development trend of asthma, and achieve the goal of improving efficiency, ensuring accuracy, and improving comparison efficiency effect
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[0095] 1.1 Sample collection
[0096] Referring to the method described in A metagenome-wide association study of gut microbiota in type2diabetes (Qin, J. et al. Nature 490, 55-60 (2012)), the feces samples were collected and transported frozen and quickly transferred to -80°C for storage. Perform DNA extraction to obtain an extracted DNA sample. Stool samples from asthmatic and non-asthmatic subjects were obtained from adult twins in the UK, totaling 250 cases, and then 29 samples with missing phenotypes were discarded from the 250 total samples. The means can not determine the samples of disease or not, the remaining 221 samples include 185 healthy samples and 36 asthmatic samples.
[0097] 1.2 Metagenome sequencing and assembly
[0098] The extracted DNA samples were used to construct a sequencing library, and two-way (Paired-end) metagenomic sequencing (insert fragment 350bp, read length 100bp) was performed on the Illumina HiSeq2000 sequencing platform. Filter the data...
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