Hutnfr1 selective antagonists
A selective and ligand-based technology, applied in anti-inflammatory agents, antiviral agents, non-central analgesics, etc., can solve problems such as inability to evaluate the therapeutic effect
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Embodiment 1
[0097] Example 1 : Electronic (in silico) generation of anti-TNF receptor 1 antagonist based on mouse monoclonal antibody H398 sequence and human germline IgV gene sequence
[0098] Utilize H398 heavy chain variable region (V H ) And the light chain variable region (V L ) (Moosmayer et al., Ther. Immunol., 1995, No. 2, p. 31-40) amino acid sequence, in the V base database (http: / / vbase.mrc-cpe.cam.ac.uk / ) and IgBlast Search for similar human germline V segments. The search identified several V with 61.2-62.2% full similarity H Germline sequence (DP75, DP8, DP88) and several V with 80.0-81.0% similarity L Germline sequence (DPK15, DPK13, DPK27, DPK28). Compare the identified sequence with the V of H398 H And V L For comparison, the critical amino acids of CDR structure, V H / V L The critical part and the cursor area are identified as described (O'Brien S., Jones T., Antibody engineering, a lab manual, Springer, 2001, p.567-590; Lo BKC, Antibody engineering, methods and protocols,...
Embodiment 2
[0099] Example 2 : Synthesis of the DNA sequence of IZI-06.1VH and IZI-06.1VL
[0100] The codon optimized DNA encoding the two humanized variable regions (IZI-06.1VH, (SEQ ID NO.: 7), IZI-06.1VL (SEQ ID NO.: 8)) was synthesized by GeneArt (Regensburg, Germany), And add the appropriate cloning site ( figure 2 ).
Embodiment 3
[0101] Example 3 : Model structure of H398 and IZI-06.1Fv fragment
[0102] A Web Antibody Modelling server (WAM) (Whitelegg N.R.J., Rees A.R., Web.Prot.Eng., 2000, No. 13, p.819-824) was used to generate the model structures of H398 and IZI-06.1Fv. The comparison of the two model structures showed a high degree of consistency between the protein backbone and the side chain structures including CDRs, except that CDRH3 showed a slight distortion ( image 3 ). In this way, the Asp96 on the top of CDRH3 of the H398 model and IZI-06.1 model has been removed from the antigen binding pocket (pocket) by about 0.38 nm.
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