Method for rapidly identifying rice black-streaked dwarf virus and southern rice black-streaked dwarf virus
A technology of rice black-streaked dwarf and black-streaked dwarf virus, which is applied in the direction of microorganism-based methods, biochemical equipment and methods, and microbial measurement/inspection, and can solve the problem that sequence homology is difficult to distinguish and has not yet been seen. and other issues to achieve the effect of specific identification methods
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example 1
[0042] The mixed samples of rice that are known to be infected with rice black-streaked dwarf virus and southern rice black-streaked dwarf virus and rice samples infected with rice black-streaked dwarf virus and southern rice black-streaked dwarf virus respectively are used as the test objects. Healthy rice The sample is a negative control.
[0043] 1. Primer design:
[0044] (1) According to NCBI ( http: / / www.ncbi.nlm.nih.gov / sites / entrez? db=nucleotide The S9 nucleotide sequence of rice black streaked dwarf virus (AB011403, AF459812, AY050486, AY050487, AJ291706, AJ297429, AJ297430, NC_003731, AF536564, AF540976, AY039705) and southern rice black streaked dwarf virus (EU523359, EU784843) have been reported on ) S9 nucleotide sequence design degenerate primer, the primer sequence is as follows:
[0045] RB1_S9_F: 5`-GRTAGACAGGCAAAYMTAAGCGT-3`
[0046] RB2_S9_F: 5`-TTACAYCAAGCACTTTGCGAGG-3`
[0047] RB_S9_R: 5`-GGATTACAACAHACACAMCGAAA-3`
[0048] (2) The primer pairing and the size o...
example 2
[0079] The mixed samples of rice that are known to be infected with rice black-streaked dwarf virus and southern rice black-streaked dwarf virus and rice samples infected with rice black-streaked dwarf virus and southern rice black-streaked dwarf virus respectively are used as the test objects. Healthy rice The sample is a negative control.
[0080] 1. Primer design:
[0081] (1) According to NCBI ( http: / / www.ncbi.nlm.nih.gov / sites / entrez? db=nucleotide The S9 nucleotide sequence of rice black streaked dwarf virus (AB011403, AF459812, AY050486, AY050487, AJ291706, AJ297429, AJ297430, NC_003731, AF536564, AF540976, AY039705) and southern rice black streaked dwarf virus (EU523359, EU784843) have been reported on ) S9 nucleotide sequence design degenerate primer, the primer sequence is as follows:
[0082] RB1_S9_F: 5`-GRTAGACAGGCAAAYMTAAGCGT-3`
[0083] RB2_S9_F: 5`-TTACAYCAAGCACTTTGCGAGG-3`
[0084] RB_S9_R: 5`-GGATTACAACAHACACAMCGAAA-3`
[0085] (2) The primer pairing and the size o...
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