High-throughput sequencing data quality control system based on multi-core CPU and GPGPU hardware

Abstract

The invention provides a computing analysis system which is based on multi-core CPU and GPGPU hardware and combines software and hardware, and particularly relates to a high-throughput sequencing data quality control system based on multi-core CPU and GPGPU hardware. According to the characteristic that massive data can be processed in parallel in the high-throughput sequencing data processing process, the system is provided to solve the problem that a traditional computer cannot meet the analysis requirement for carrying out quality control over massive high-throughput sequencing data. A main module of the high-throughput sequencing data quality control system based on the multi-core CPU and GPGPU hardware comprises a multi-core CPU and GPGPU computer and a unified software platform. The system is characterized in that a high-performance parallel computing and storage hardware system and the high-performance, unified and configurable software platform are included. According to high-throughput sequencing data quality control processing based on the multi-core CPU and GPGPU hardware, analysis efficiency of high-throughput sequencing data quality control can be obviously improved.

Description

technical field [0001] The patent of the present invention relates to a computer analysis system combining software and hardware for quality control of high-throughput sequencing data in bioinformatics, especially capable of quickly performing quality control on high-throughput sequencing data. Background technique [0002] High-throughput sequencing technology, also known as "next generation" sequencing technology, is a revolutionary change to traditional sequencing. It can sequence hundreds of thousands to millions of DNA / RNA molecules at a time, making the transcriptome of a species , Genomes and metagenomes of microbial communities can be analyzed in detail and comprehensively, and are more and more widely used in biology and related research. [0003] Compared with the traditional Sanger sequencing technology, the throughput of the next-generation sequencing technology is increased by one to two orders of magnitude, and it can economically cover the genome with high mag...

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Problems solved by technology

[0004] In order to overcome the deficiency that traditional computers and analysis methods cannot meet the requirements of high-throughput sequencing data analysis, the present invention proposes a method based on multi-core CPU and GPGPU (general-purpose parallel processor) according to the characteristics that data can be processed in parallel in high-throughput sequencing data processing. ) High-throughput sequencing data quality control system based on hardware, software and hardware methods

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