Primer groups and kit for detecting ABO genotypes of human red blood cells, and application of kit
An ABO blood type and genotyping technology, applied in the biological field, can solve the problems of low sample throughput, difficulty in achieving high-throughput operation, and the inability of ABO genotyping to achieve high-throughput accurate typing
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Embodiment 1
[0090] Example 1 Primer Design
[0091] According to the ABO allele reference sequence released by the National Center for Biotechnology Information Gene Bank (NCBI Gene Bank), and by consulting a large number of ABO blood group system related literature and accumulated experimental data, the 10 ABO blood group subtypes detected were determined. According to the 24 multiple allele SNP sites corresponding to the 10 ABO blood group subtypes in the blood group antigen mutation database, A101, A102 (467C>T), A201 (467C>T, 1061delC), A205 (467C>T, 1009A >G), B101(297A>G, 526C>G, 657C>T, 703G>A, 796C>A, 803G>C, 930G>A, 1096G>A), O01(261delG), O02(106G>T, 188G>A, 189C>T, 220C>T, 261delG, 646T>A, 681G>A, 771C>T, 829G>A), O03 (53G>T, 220C>T, 297A>G, 526C>G, 802G >A), O04 (261delG, 579), O07 (261delG, 297A>G, 646T>A, 681G>A, 721C>T, 771C>T, 829G>A) for primer design.
[0092] Based on the principle of competitive allele-specific PCR, 24 pairs of primer sets were designed for simultane...
Embodiment 2
[0093] Embodiment 2 kit preparation
[0094] The 24 sets of primers are used to prepare a kit for detecting ABO genotyping of human erythrocytes.
[0095] The volume of the three primers in each primer set in the kit is equal to 0.05 μL, which are coated in the chip reaction pool in advance, 0.25 μL of sample genomic DNA, 0.5 μL of PCR amplification reagent and 0.25 μL of 1*TE buffer to form a PCR reaction system, the total volume of each PCR reaction system is 1.15 μL, the concentration of genomic DNA is 10-50ng / μL, and the A260 / A280 OD value is 1.6-2.0; the PCR amplification reagent is composed of HEX or FAM fluorescent group Universal probes, dNTPs, Mg 2+ , DNA polymerase and 2xMasterMix of reaction buffer.
[0096] Through competitive allele-specific PCR amplification, and finally detect the fluorescent signal of the PCR product, and group the samples according to the fluorescent signal to perform genotyping. Using these primer sets can realize multi-site combined detec...
Embodiment 3
[0105] Example 3 Detection of 22 SNP gene sites
[0106] 1. Collect the blood of 260 unrelated blood donors and extract genomic DNA: the sample suitable for this kit is human genomic DNA extracted from whole blood. The tested genomic DNA needs to meet the concentration of 10ng / μL-50ng / μL. The extracted human genomic DNA needs to be tested for its concentration. If the concentration is higher than 50ng / μL, it needs to be diluted to meet the above requirements before subsequent experiments can be carried out; if the concentration is lower than 10ng / μL, it needs to be re-extracted until it meets the requirements.
[0107] 2. Use the special kit prepared above to detect 22 SNP site information for 260 people, and perform the following operations according to the operation process:
[0108] 2.1 Aliquot PCR amplification reagents
[0109] In the reagent storage and preparation area, prepare a corresponding number of 0.2mL centrifuge tubes according to the number of samples, and ma...
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