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Primer groups and kit for detecting ABO genotypes of human red blood cells, and application of kit

An ABO blood type and genotyping technology, applied in the biological field, can solve the problems of low sample throughput, difficulty in achieving high-throughput operation, and the inability of ABO genotyping to achieve high-throughput accurate typing

Active Publication Date: 2020-04-10
河南兰德施坦纳基因科技有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The PCR-SSP method requires multi-tube amplification and multi-band electrophoresis, and there is also the risk of mistyping caused by confusing interpretation
The biggest defect of the PCR-SBT typing method is that the operation process is very cumbersome, the workload is heavy, and it is difficult to achieve high-throughput operation
The amplification of different regions of the ABO gene has different amplification conditions, which not only requires a large sample size, but also increases the consumption of reagent consumables, and requires more equipment resources
To sum up, the current common methods have the following problems: the first point is that the experimental operation is complicated and the steps are cumbersome; the second point is that the result interpretation is still manual; the third point is that the sample throughput is low; the fourth point is that the cost is relatively high. high
These defects directly lead to the inability of ABO genotyping to achieve high-throughput accurate typing, and it is difficult to adapt to the increasing medical needs in the future

Method used

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  • Primer groups and kit for detecting ABO genotypes of human red blood cells, and application of kit
  • Primer groups and kit for detecting ABO genotypes of human red blood cells, and application of kit
  • Primer groups and kit for detecting ABO genotypes of human red blood cells, and application of kit

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0090] Example 1 Primer Design

[0091] According to the ABO allele reference sequence released by the National Center for Biotechnology Information Gene Bank (NCBI Gene Bank), and by consulting a large number of ABO blood group system related literature and accumulated experimental data, the 10 ABO blood group subtypes detected were determined. According to the 24 multiple allele SNP sites corresponding to the 10 ABO blood group subtypes in the blood group antigen mutation database, A101, A102 (467C>T), A201 (467C>T, 1061delC), A205 (467C>T, 1009A >G), B101(297A>G, 526C>G, 657C>T, 703G>A, 796C>A, 803G>C, 930G>A, 1096G>A), O01(261delG), O02(106G>T, 188G>A, 189C>T, 220C>T, 261delG, 646T>A, 681G>A, 771C>T, 829G>A), O03 (53G>T, 220C>T, 297A>G, 526C>G, 802G >A), O04 (261delG, 579), O07 (261delG, 297A>G, 646T>A, 681G>A, 721C>T, 771C>T, 829G>A) for primer design.

[0092] Based on the principle of competitive allele-specific PCR, 24 pairs of primer sets were designed for simultane...

Embodiment 2

[0093] Embodiment 2 kit preparation

[0094] The 24 sets of primers are used to prepare a kit for detecting ABO genotyping of human erythrocytes.

[0095] The volume of the three primers in each primer set in the kit is equal to 0.05 μL, which are coated in the chip reaction pool in advance, 0.25 μL of sample genomic DNA, 0.5 μL of PCR amplification reagent and 0.25 μL of 1*TE buffer to form a PCR reaction system, the total volume of each PCR reaction system is 1.15 μL, the concentration of genomic DNA is 10-50ng / μL, and the A260 / A280 OD value is 1.6-2.0; the PCR amplification reagent is composed of HEX or FAM fluorescent group Universal probes, dNTPs, Mg 2+ , DNA polymerase and 2xMasterMix of reaction buffer.

[0096] Through competitive allele-specific PCR amplification, and finally detect the fluorescent signal of the PCR product, and group the samples according to the fluorescent signal to perform genotyping. Using these primer sets can realize multi-site combined detec...

Embodiment 3

[0105] Example 3 Detection of 22 SNP gene sites

[0106] 1. Collect the blood of 260 unrelated blood donors and extract genomic DNA: the sample suitable for this kit is human genomic DNA extracted from whole blood. The tested genomic DNA needs to meet the concentration of 10ng / μL-50ng / μL. The extracted human genomic DNA needs to be tested for its concentration. If the concentration is higher than 50ng / μL, it needs to be diluted to meet the above requirements before subsequent experiments can be carried out; if the concentration is lower than 10ng / μL, it needs to be re-extracted until it meets the requirements.

[0107] 2. Use the special kit prepared above to detect 22 SNP site information for 260 people, and perform the following operations according to the operation process:

[0108] 2.1 Aliquot PCR amplification reagents

[0109] In the reagent storage and preparation area, prepare a corresponding number of 0.2mL centrifuge tubes according to the number of samples, and ma...

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Abstract

The invention discloses primer groups and a kit for detecting ABO genotypes of human red blood cells, and application of the kit in reagents. 24 primer groups are disclosed in the invention, and the sequence table of the 24 primer groups is as shown in SEQ ID No. 1-72. The kit comprises at least 22 primer groups selected from the 24 primer groups. The reagents comprise the 24 group primer groups or the kit. The primers are optimally designed and have similar annealing temperatures, so the 24 groups of primers can be simultaneously amplified under the same PCR amplification condition; the volume of each PCR reaction system is only 1.15 mu L, and only 5-10 ng of a DNA template is needed, so detection efficiency and reaction sensitivity are greatly improved; and the primer groups have the advantages of high speed, low cost, high sensitivity, easy realization of multi-site joint detection and the like when used for detection.

Description

technical field [0001] The invention relates to the field of biotechnology, in particular to a primer set, a kit and an application for detecting human erythrocyte ABO blood type genotyping. Background technique [0002] Since the famous Austrian medical scientist Karl Landerstainer discovered the human ABO blood group system in 1900, there are currently 39 blood group systems recognized by the International Society of Blood Transfusion (ISBT). The ABO blood group system is the most immunogenic blood group system in the human blood group system, and it is also a classic human genetic marker, so it plays an important role in blood transfusion medicine, paternity testing, anthropological research, and forensic evidence testing. [0003] The human ABO gene is located on chromosome 9 (9q34.1-9q34.2), controlled by three multiple alleles A, B and O, including 7 exons ranging in length from 28bp to 691bp and 6 exons of about 19514bp in length. An intron, its DNA sequence is highl...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6883C12N15/11
CPCC12Q1/6883C12Q2600/156
Inventor 胡志超胡智明李颖龙郭飞飞程艳伟王光辉郭秀明
Owner 河南兰德施坦纳基因科技有限公司
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