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Data processing method and device for gene detection and electronic equipment

A gene detection and data processing technology, applied in the field of data processing, can solve the problems of low efficiency and inconvenient operation of the genetic detection process, and achieve the effect of improving efficiency and simplifying steps

Active Publication Date: 2022-01-28
BEIJING USCI MEDICAL DEVICES CO LTD
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Problems solved by technology

[0004] The above process involves multiple steps, the operation is inconvenient, and the efficiency of the genetic testing process is low

Method used

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  • Data processing method and device for gene detection and electronic equipment
  • Data processing method and device for gene detection and electronic equipment

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Embodiment Construction

[0073] In order to make the purpose, technical solutions and advantages of the present invention clearer, the technical solutions in the present invention will be clearly and completely described below in conjunction with the accompanying drawings in the present invention. Obviously, the described embodiments are part of the embodiments of the present invention , but not all examples. Based on the embodiments of the present invention, all other embodiments obtained by persons of ordinary skill in the art without creative efforts fall within the protection scope of the present invention.

[0074] Combine below Figure 1-Figure 5 The data processing method for gene detection of the present invention will be described.

[0075] figure 1 It is one of the schematic flow charts of the data processing method for gene detection provided by the present invention, such as figure 1 As shown, the method includes:

[0076] Step 110, obtaining the sequence to be detected.

[0077] Wher...

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Abstract

The invention provides a data processing method and device for gene detection and electronic equipment. The method comprises the following steps: acquiring a to-be-detected sequence; inputting the to-be-detected sequence into a gene detection model to obtain a gene detection result output by the gene detection model, the to-be-detected sequence being obtained by the following steps: obtaining an original sequence comprising at least one read sequence; determining a sequence number corresponding to the read sequence; according to the sequence number, preprocessing the corresponding read sequence; and determining the to-be-detected sequence according to each preprocessed read sequence. According to the data processing method and device for gene detection and the electronic equipment, the corresponding read sequence is preprocessed according to the sequence number, multiple pieces of software are not needed, the preprocessing step is simplified, and the efficiency of the whole gene detection process can be improved.

Description

technical field [0001] The invention relates to the technical field of data processing, in particular to a data processing method, device and electronic equipment for gene detection. Background technique [0002] Before performing data analysis on the original FASTQ (sequence format) files of next-generation sequencing, the data needs to be preprocessed to ensure that the input data for downstream analysis is clean and reliable. Especially in the field of liquid biopsy, it is necessary to use data to detect low-frequency gene mutations, and data preprocessing is particularly important at this time. Traditional data preprocessing usually includes cutting adapter sequences, cutting out low-quality sequencing and base sequences measured as N, and cutting out repetitive sequences. [0003] In the prior art, data preprocessing is usually divided into several steps: first, use Cutadapt (joiner removal software) to perform adapter removal, and then use Trimmoatic (data quality con...

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Application Information

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IPC IPC(8): G16B30/00G16B20/00
CPCG16B30/00G16B20/00
Inventor 姬晓勇高司航单光宇伍启熹王建伟
Owner BEIJING USCI MEDICAL DEVICES CO LTD
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