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LAMP (loop-mediated isothermal amplification) combined detection primer, detection kit and detection method for rhizome traditional Chinese medicinal materials

A technology of combined detection and Chinese medicinal materials, applied in the fields of biochemical equipment and methods, recombinant DNA technology, and microbial determination/inspection, etc. problem, to achieve the effect of convenient operation, expanding the scope of use, and getting rid of dependencies

Active Publication Date: 2022-03-11
SHAANXI NORMAL UNIV
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  • Description
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AI Technical Summary

Problems solved by technology

[0008] The purpose of the present invention is to provide a combination detection primer, detection kit and detection method of LAMP of rhizome Chinese medicinal materials, and aim at the detection and identification of root rot and white silkworm pathogens of rhizome Chinese medicinal materials in the prior art mainly based on morphological characteristics , the method takes a long time, the procedure is cumbersome, highly technical, and the accuracy is low. It is difficult to monitor the occurrence of the disease in time and control the spread and prevalence of pathogenic bacteria. In addition, the existing PCR molecular detection needs to rely on expensive instruments such as amplifiers, and For problems such as long detection time, a rapid molecular detection method is provided for root rot of rhizome Chinese medicinal materials and pathogenic bacteria of white silkworm. LAMP detection is performed on pathogenic bacteria. The detection cycle is short, the accuracy is high, the sensitivity is high, and the detection results are observed by naked eyes.

Method used

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  • LAMP (loop-mediated isothermal amplification) combined detection primer, detection kit and detection method for rhizome traditional Chinese medicinal materials
  • LAMP (loop-mediated isothermal amplification) combined detection primer, detection kit and detection method for rhizome traditional Chinese medicinal materials
  • LAMP (loop-mediated isothermal amplification) combined detection primer, detection kit and detection method for rhizome traditional Chinese medicinal materials

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Experimental program
Comparison scheme
Effect test

Embodiment 1

[0107] Embodiment 1: Screening of primers

[0108] Table 3 Fusarium oxysporum detection primer sequence

[0109]

[0110]

[0111] figure 1 In a, the color judgment primer set1 LAMP detects the specific color rendering diagram of Fusarium oxysporum (Fusarium oxysporum). The figure shows that tubes 1 to 8 are purple and negative. 1~3: Fusarium oxysporum; 4: F.equiseti; 5: F. graminearum; 6: F.moniliforme; 7: F.nivale; 8: H 2 O.

[0112] figure 1 In b, the color judgment primer set2 LAMP detects the specific color rendering diagram of Fusarium oxysporum (Fusarium oxysporum). The figure shows that tubes 1 to 8 are purple and negative. 1~3: Fusarium oxysporum; 4: F.equiseti; 5: F. graminearum; 6: F.moniliforme; 7: F.nivale; 8: H 2 O.

[0113] figure 1 In c, the color determination primer set3 LAMP detects the specific chromogenic diagram of Fusarium oxysporum (Fusarium oxysporum). The figure shows that tubes 1 to 8 are purple and negative. 1~3: Fusarium oxysporum; 4:...

Embodiment 2

[0136] Example 2: A LAMP detection kit suitable for detecting common root rot and white silkworm pathogens (Fusarium oxysporum, Fusarium solani, Mucor circinelloides, Atheliarolfsii) of rhizome Chinese medicinal materials (such as Salvia miltiorrhiza, Aconite and Yuanhu, etc.):

[0137] LAMP primer composition of Fusarium oxysporum: Contains 25 μL detection solution, said detection solution includes: 0.2 μM forward outer primer F3, 0.2 μM reverse outer primer B3, 1.6 μM forward inner primer FIP, 1.6 μM reverse inner primer BIP, 0.8μM Forward Loop Primer LF, 1.4mM dNTPs, 1×LAMP Buffer, 1×Xylenol Orange, 0.8M Betaine, 8mMMgS04, 0.32U / μL Bst DNA polymerase.

[0138] LAMP primer composition of Fusarium solani: Contains 25 μL detection solution, said detection solution includes: 0.2 μM forward outer primer F3, 0.2 μM reverse outer primer B3, 1.6 μM forward inner primer FIP, 1.6 μM reverse inner primer BIP, 0.8μM forward loop primer LF, 0.8μM reverse loop primer LB, 1.4mM dNTPs, 1×L...

Embodiment 3

[0142] Example 3: Specificity test of LAMP reaction of common root rot of rhizome class Chinese herbal medicines and white silkworm pathogens (Fusarium oxysporum, Fusarium solani, Mucor circinelloides, Athelia rolfsii)

[0143] In order to verify the specific primer sequences of Fusarium oxysporum, 9 strains of Fusarium oxysporum and 17 other bacterial strains were used as test materials (Table 1). The LAMP detection results showed that all 9 strains of Fusarium oxysporum could observe yellow color changes. After electrophoresis A ladder-like band of LAMP can be observed. Select 10 strains different from Fusarium oxysporum (Fusarium avenaceum, F.culmorum, F.equiseti, F.equiseti, F.graminearum, F.moniliforme, F.nivale, F.proliferatum, F.solani, F.solani) and The DNA of 7 strains of different genera (Botrytis cinerea, Phytophthora cactorum, P.cambivora, P.iranica, P.pseudosyringae, Pythium carbonicum, Py.Boreale.) was used as a template, and 1 μL of the DNA solution was added to...

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Abstract

The invention discloses an LAMP (Loop-Mediated Isothermal Amplification) combined detection primer, a detection kit and a detection method for rhizome traditional Chinese medicinal materials. The LAMP combined detection primer comprises a forward outer primer F3, a reverse outer primer B3, a forward inner primer FIP, a reverse inner primer BIP, a forward loop primer LF and a reverse loop primer LB; the detection kit comprises an LAMP detection primer and an LAMP reaction solution. The detection method has high accuracy and sensitivity and is convenient to operate, isothermal amplification is achieved, and meanwhile a new technical platform is provided for detection of common root rot and southern blight pathogenic bacteria. The kit can be used for high-sensitivity rapid detection of common root rot and southern blight pathogenic bacteria of traditional Chinese medicinal materials in production practice, can detect pathogenic bacteria in the early stage of disease infected plants, and can detect pathogenic bacteria in field soil. Reliable technical and theoretical basis is provided for prevention and treatment of common root rot and southern blight of rhizome traditional Chinese medicinal materials (such as salvia miltiorrhiza, radix aconiti carmichaeli and rhizoma corydalis).

Description

technical field [0001] The invention belongs to the field of biotechnology, and in particular relates to a combination detection primer, a detection kit and a detection method of rhizome-like Chinese medicinal materials LAMP. Background technique [0002] Fusarium oxysporum belongs to Eumycetes, Ascomycota, Sordariomycetes, Hypocreales, Nectriaceae, Fusarium . It is a kind of facultative parasitic fungus that can infect plants and survive in the soil. It is the pathogenic bacteria of common root rot in Chinese medicinal materials (Aconite, Yuanhu, Salvia, etc.). And the plant wilt caused by its infection is a worldwide soil-borne fungal disease. It has a wide range of hosts and can cause more than 100 types of plant wilts such as melons, Solanaceae, bananas, cotton, legumes and flowers. The pathogen damages plants from the roots, causes vascular bundle diseases, and causes plant death. It can occur during the whole growth period of plants, causing huge losses to productio...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6895C12Q1/6844C12Q1/04C12N15/11
CPCC12Q1/6895C12Q1/6844C12Q2600/16C12Q2531/119C12Q2537/1376C12Q2537/143C12Q2563/103Y02A50/30
Inventor 李明珠刘兢哲郭倩梁梦怡强毅崔浪军闫亚平
Owner SHAANXI NORMAL UNIV
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