Unlock instant, AI-driven research and patent intelligence for your innovation.

Method for preparing standard reference for qualitative, quantitative DNA

A deoxyribonucleic acid and reference technology, applied in the field of genetic engineering, can solve the problems of uneven distribution of fragments, many reaction tubes and reagents, and increased manufacturing costs.

Inactive Publication Date: 2009-03-25
XINXIANG MEDICAL UNIV
View PDF1 Cites 0 Cited by
  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0002] The deoxyribonucleic acid standard reference substance is composed of a series of known deoxyribonucleic acid fragments with different numbers of bases. There are two types of preparation methods. The first type of method is enzymatic digestion, which has defects in natural genes and phage DNA methods. The reason is that the fragments are not evenly distributed, and there is often a large gap between some fragments, which makes it impossible to scale the region more accurately. However, the preparation steps of the artificially constructed vector by enzyme digestion are cumbersome, and in The operation process of conversion, extraction and enzyme digestion requires high technical difficulty and is not suitable for industrial production
The second type of method is the polymerase chain reaction (PCR) method, by designing a series of PCR products that can amplify the length of DNA with different base numbers to obtain a series of DNA fragments of different lengths, and then purifying and mixing the DNA fragments of different lengths to prepare This kind of PCR amplification prepares gradient deoxyribonucleic acid standard reference substance. The preparation steps are relatively simple, which overcomes the disadvantages of many enzyme digestion steps and high difficulty of preparation process. However, the disadvantage of this method is that due to multiple Different PCR primers are used to amplify DNA bands in different reaction tubes, which requires a lot of equipment; because different DNA bands come from different reaction tubes, there is no definite proportional relationship between the DNA fragments in each tube, giving The deployment of different DNA bands in the later stage causes difficulties and lacks quantitative functions; in addition, when this method requires gel purification, it increases the chance of single-strand breaks in double-stranded DNA molecules. Due to the use of many reaction tubes and reagents, increased manufacturing costs

Method used

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
View more

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0005] Preparation of 100bp DNA standard reference substance

[0006] This DNA standard reference contains one copy of 100bp, 200bp, 300bp, 400bp, 500bp, 600bp, 700bp, 800bp, 900bp, 1000bp DNA fragments.

[0007] The designed template is as follows: the total length of the template is 1000bp, the base composition G+C content is 40-60%, and the two DNA base sequences of the template are complementary sequences, and the base sequence is:

[0008] 5′-gATgATTTgTgTCCgTACAACTg-3′

[0009] 5′-CAgTTgTACggACACAAATCATC-3′

[0010] Design repeat fragments containing the following base sequences every 100bp from the start,

[0011] 5'-gATgATTTgTgTCCgTACAACTg-3', the number of repetitions is 9 times, the base sequence of the designed PCR primer is the same as the base sequence of the repeating fragment, namely: 5'-gATgATTTgTgTCCgTACAACTg-3',

[0012] The PCR reaction system is as follows: Mg 2+ 1.5mmol / L, KCl 50mmol / L, dNTPs 200μmmol / L, primer 2μmol / L, DNA polymerase 1-5 units, templat...

Embodiment 2

[0016] Preparation of 100bp DNA standard reference substances containing different copy numbers

[0017] This DNA standard reference substance contains two copies of DNA fragments of 200bp, 500bp, and 1000bp. 800bp, 900bp fragments.

[0018] The designed template is as follows: the total length of the template is 2000bp, the base composition G+C content is 40-60%, and the base sequences at both ends are:

[0019] 5′-ATgATTTgTgTCCgTACAACT-3′

[0020] The base sequence at 1000bp is complementary to the base sequence at both ends, and the base sequence is:

[0021] 5'-AgTTgTACggACACAAATCAT-3',

[0022] Same as the template design in Example 1, design a repeat fragment containing the following base sequence every 100 bp from the 5' starting end, 5'-ATgATTTgTgTCCgTACAACT-3', the number of repetitions is 8 times, and then 200 bp, 500 bp, 1000 bp from 1000 bp Design includes:

[0023] Repeat fragment of 5'-ATgATTTgTgTCCgTACAACT-3',

[0024] The designed PCR primers are: 5′-ATgA...

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

PUM

No PUM Login to View More

Abstract

This invention discloses a simple and low-cost method for preparing qualitative and quantitative DNA marker. The DNA marker is prepared by PCR. In the PCR, the template is an artificially synthesized DNA fragment containing repeated DNA sequence, while the primers are the same or complementary with the repeated sequence. The template and primer are placed in a single reaction tube to perform PCR and obtain the needed DNA marker. The template contains 15-30 bp repeated DNA fragments, the repeating number of the repeated sequence is not more than 50, and the alkali number between two repeated sequences is integer times of 20 bp.

Description

Technical field: [0001] The invention relates to a genetic engineering, in particular to a method for preparing a qualitative and quantitative deoxyribonucleic acid standard reference substance. Background technique: [0002] The deoxyribonucleic acid standard reference substance is composed of a series of known deoxyribonucleic acid fragments with different numbers of bases. There are two types of preparation methods. The first type of method is enzymatic digestion, which has defects in natural genes and phage DNA methods. The reason is that the fragments are not evenly distributed, and there is often a large gap between some fragments, which makes it impossible to scale the region more accurately. However, the preparation steps of the artificially constructed vector by enzyme digestion are cumbersome, and in The operation process of conversion, extraction and enzyme digestion requires high technical difficulty and is not suitable for industrial production. The second type...

Claims

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

Application Information

Patent Timeline
no application Login to View More
Patent Type & Authority Patents(China)
IPC IPC(8): C07H21/04
Inventor 王天云王俐杨瑞昝玉玺秦川井长勤
Owner XINXIANG MEDICAL UNIV