Plant chimeric binding polypeptides for universal molecular recognition
A peptide, the most advanced technology, applied in the field of plant chimeric binding peptides for general molecular recognition, can solve problems such as commercialization obstacles
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[0153] Embodiment 1, Design and expression of plant scaffold polypeptide sequences
[0154] Several protein domain families were analyzed for their potential to serve as scaffolds. Restricting output to the plant kingdom (Viridiplantae), a PFAM domain search (pfam.wustl.edu; see Bateman et al. (2004)) was performed to restrict domains to those present in green plants. Four protein domain families were selected to build a general plant molecular recognition library: the paradomain of purple acid phosphatase (PAP), plant cysteine protease inhibitors, the plant C2 domain and the ankyrin repeat protein Turn-helix-helix (THH) motif.
[0155] Three purple acid phosphatase scaffolds were designed with the sequences in SEQ ID NO: 34-36. The amino acid sequence of the paradomain from kidney bean PAP was used as query sequence to BLAST against the NCBI database. When limiting the output to proteins found in plants, 62 unique sequences were identified. From the alignment of these...
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