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Method for high sensitivity detection of Phytophthora hibernalis Carne

A high-sensitivity technology for Phytophthora winteris, which is applied in the field of detection of Phytophthora winteris brown rot pathogen of citrus, can solve the problem that the amplified bands of citrus samples with bacteria are not particularly obvious, and achieve high sensitivity, good repeatability, and easy operation. easy effect

Inactive Publication Date: 2015-06-10
HUBEI ENTRY EXIT INSPECTION & QUARANTINE BUREAUOF THE PEOPLES REPUBLIC OF CHINA
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The detection limit can reach the level of 10 fg genomic DNA per 25 μL reaction system, but the amplified bands of the infected citrus samples are not particularly obvious

Method used

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  • Method for high sensitivity detection of Phytophthora hibernalis Carne
  • Method for high sensitivity detection of Phytophthora hibernalis Carne

Examples

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Embodiment 1

[0027] The total volume of the RCA reaction system in this example is 10 μl. The specific detection method is as follows: (1) Add 5.9 μl of sterilized deionized water, 1 μl of 10×phi29 DNA polymerase buffer, 0.5 μl of sense primer PHIB1 with a concentration of 10 μM, and reverse reaction primer with a concentration of 10 μM in a sterile centrifuge tube. The volume of sense primer PHIB2 is 0.5 μl and the volume of target DNA with a concentration of 200 ng / μl is 1 μl, and then they are mixed evenly and centrifuged, and the reaction solution is centrifuged to the bottom of the tube;

[0028] (2) Heat the centrifuge tube at 95°C for 3 minutes with a PCR instrument, and then quickly ice-bath for 15 minutes;

[0029] (3) Add 0.5 μl of dNTPs mixture with a concentration of 2.5 mM each, 0.1 μl of BSA with a concentration of 1%, and 0.5 μl of phi29 DNA polymerase with a concentration of 10 U / μl in the centrifuge tube, mix well, and centrifuge. The reaction solution was centrifuged to ...

Embodiment 2

[0035] The total volume of the RCA reaction system in this example is 10 μl. The specific detection method is as follows: (1) Add 5.9 μl of sterilized deionized water, 1 μl of 10×phi29 DNA polymerase buffer, 0.5 μl of sense primer PHIB1 with a concentration of 10 μM, and reverse reaction primer with a concentration of 10 μM in a sterile centrifuge tube. The volume of sense primer PHIB2 is 0.5 μl and the volume of target DNA with a concentration of 110 ng / μl is 1 μl, and then they are mixed evenly and then centrifuged, and the reaction solution is centrifuged to the bottom of the tube;

[0036] (2) Heat the centrifuge tube with a PCR instrument at 95°C for 5 minutes, and then quickly ice-bath for 18 minutes;

[0037] (3) Add 0.5 μl of dNTPs mixture with a concentration of 2.5 mM each, 0.1 μl of BSA with a concentration of 1%, and 0.5 μl of phi29 DNA polymerase with a concentration of 10 U / μl in the centrifuge tube, mix well, and centrifuge. The reaction solution was centrifuge...

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Abstract

The invention provides a method for high sensitivity detection of Phytophthora hibernalis Carne. The method comprises the following steps of orderly adding sterile deionized water, a phi29 DNA polymerase buffer solution, a forward primer PHIB1, a reverse primer PHIB2 and an object DNA into a sterile centrifugation tube, uniformly mixing, carrying out centrifugation of the mixed reaction liquid to tube bottom, heating the sterile centrifugation tube, fast cooling in an ice-bath, orderly adding a dNTPs mixture, BSA and a phi29 DNA polymerase into the sterile centrifugation tube to obtain an RCA reaction product, utilizing a novel sterile centrifugation tube, carrying out PCR amplification to obtain a PCR reaction product, and detecting the PCR reaction product. The method can realize fast and sensitive detection of Phytophthora hibernalis Carne. The sensitivity of the method provided by the invention is 10*4<9> times higher than that of the traditional PCR amplification detection method.

Description

technical field [0001] The invention relates to a method for detecting the citrus Phytophthora winteris brown rot pathogen, in particular to a highly sensitive method for detecting the citrus Phytophthora winteris brown rot pathogen by using RCA-PCR technology. Background technique [0002] The brown rot pathogen Phytophthora hibernalis Carne of citrus has a wide range of hosts, serious damage to citrus production, and wide distribution, and can be spread over long distances with diseased fruits, tissues, or vegetative propagation materials. my country's citrus planting areas are widely distributed. In recent years, these pathogenic bacteria have become more and more likely to be introduced into my country with the introduction of high-quality seedlings. Once the disease is introduced, it will cause great harm to my country's citrus industry. Phytophthora citrus brown rot disease caused by the pathogen Phytophthora winteris brown rot was first discovered on citrus fruits in...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/68C12Q1/04C12R1/645
Inventor 王振华张建坤李凤新曾宪东
Owner HUBEI ENTRY EXIT INSPECTION & QUARANTINE BUREAUOF THE PEOPLES REPUBLIC OF CHINA