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Method, database and primer pair for identifying herbal medicinal materials

A database and primer technology, applied in biochemical equipment and methods, microbiological determination/inspection, DNA/RNA fragments, etc., can solve problems such as inability to achieve rapid identification, time-consuming and cost-consuming, and basic mixing

Inactive Publication Date: 2014-07-02
IND TECH RES INST
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0002] Commercially available medicinal materials are mixed, and there are often cases of mixed use, substitution and misuse. However, in the past, species identification had to be analyzed by sequence and searched and compared through public databases to complete the identification. This is time-consuming and cost-intensive, and cannot be achieved quickly. identification

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  • Method, database and primer pair for identifying herbal medicinal materials
  • Method, database and primer pair for identifying herbal medicinal materials
  • Method, database and primer pair for identifying herbal medicinal materials

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0268] Primer pair optimization for plants:

[0269] According to the sequence between the transcribed 18S ribosomal RNA region and the transcribed 28S ribosomal RNA region of the plant genome DNA sequence, 12 primers were designed, as shown in Table 1.

[0270] Table 1, the primer of the embodiment of the present invention

[0271]

[0272] The combination of the above-mentioned different forward primers and reverse primers can reproduce the sequence covering the part of the transcribed 18S ribosomal RNA region of the plant genome DNA sequence, the sequence of the transcribed spacer 1 (ITS1), and the sequence of the transcribed 5.8S ribosomal RNA region , the sequence of the transcribed spacer 2 (ITS2) and / or the sequence of a part of the transcribed 28S ribosomal RNA region, or a part of the sequence that can be identified between the transcribed 18S ribosomal RNA region and the transcribed 28S ribosomal RNA region.

[0273] After different combinations and optimization ...

Embodiment 2

[0286] Take the primer pair ITRI-F2 (SEQ ID: 1) / ITRI-470R (SEQ ID: 10) and the primer pair ITRI-400F (SEQ ID: 4) / ITRI-R2 (SEQ ID: 7) as an example , the above two primer pairs were used to perform polymerase chain reaction on DNA samples of various herbal medicines, and the products were analyzed by electrophoresis to explore their applicability and wide application. Complete DNA fragment replication of at least 95 families, 186 genera and 224 kinds of medicinal materials to provide HRM map database construction and analysis. The results of the primer pair ITRI-F2 (SEQ ID: 1) / ITRI-470R (SEQ ID: 10) and the primer pair ITRI-400F (SEQ ID: 4) / ITRI-R2 (SEQ ID: 7), These are shown in Figures 2a to 2q and Figures 3a to 3q, respectively. The medicinal materials represented by the symbols in Figures 2a to 2q and Figures 3a to 3q are shown in Table 2.

[0287] Table 2, medicinal materials represented by labels in Figures 2a to 2q and Figures 3a to 3q

[0288]

[0289]

[0290]...

Embodiment 3

[0295] High-resolution melting analysis (HRMA) map database construction of herbal medicinal materials:

[0296] The primer pairs of ITRI-F2 / ITRI-470R and ITRI-400F / ITRI-R2 were used to copy the fragments of various herbal medicinal materials, and then HRM analysis was performed to construct a unique ratio of 224 medicinal materials in 95 families, 186 genera (Table 2). to graph databases. Primer pair ITRI-F2 (SEQ ID: 1) / ITRI-470R (SEQ ID: 10) for the high-resolution double-strand segregation dynamics analysis of fragments copied from different plant medicinal materials is selected for each family The methods of plants are representatively shown in Figures 99 to 193; and, the primer pair ITRI-400F (SEQ ID: 4) / ITRI-R2 (SEQ ID: 7) replicated fragments of different plant medicinal materials The high-resolution double-strand segregation kinetic analysis maps are also representatively shown in Figures 99 to 193 in the way of selecting one plant per family.

[0297] In addition, a...

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Abstract

The invention provides a method for identifying types of herbal medicinal materials. The method comprises the following steps: obtaining a DNA sample of a herbal medicinal material to be detected; (b) performing a polymerase chain reaction between the DNA sample of the herbal medicinal material to be detected and at least one primer pair to obtain a polymerase chain reaction product; (c) performing high-resolution melting analysis on the polymerase chain reaction product to obtain a high-resolution melting analysis spectrum of the herbal medicinal material to be detected; and (d) comparing the high-resolution melting analysis spectrum of the herbal medicinal material to be detected with a high-resolution melting analysis spectrum of a known herbal medicinal material.

Description

technical field [0001] The present invention relates to a method for identifying a botanical species, and in particular to a method for identifying a botanical species, which combines polymerase chain reaction using specially designed primers and high resolution double-strand separation kinetics Analysis (high-resolution melting analysis, HRMA), and this identification method has the advantage of rapid and accurate identification of plant medicinal materials. Background technique [0002] Commercially available medicinal materials are mixed, and there are often cases of mixed use, substitution and misuse. However, in the past, species identification had to be analyzed by sequence analysis and searched and compared with public databases. Identification. [0003] The identification of species using DNA-recognizable barcodes has been widely recognized internationally, and plants have a higher degree of identification with the transcriptional spacer (internal transcribed spacer...

Claims

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Application Information

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IPC IPC(8): C12Q1/68C12N15/11
CPCC12Q1/686C12Q2527/107C12Q2537/165
Inventor 邱淑娇陈惠玲唐瑞霜李承榆魏培萱
Owner IND TECH RES INST
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