Method for using DNA tetrahedron as scaffold on nano-particle surface and initiating rolling circle amplification reaction
A rolling circle amplification reaction and nanoparticle technology, which is applied in biochemical equipment and methods, and the determination/inspection of microorganisms, etc. problem, to achieve the effect of improving hybridization efficiency
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Embodiment 1
[0017] Equivalent amount of chain A ( 5’- GTG AAAAA AAAAA GCA -ACA TTC CTA AGT CTG AAA CAT TAC AGC TTG CTA CAC GAG AAG AGC CGC CAT AGT A-3'), B strand (5'- TAT CAC CAG GCA GTT GAC AGT GTA GCA AGC TGT AAT AGA TGC GAG GGT CCA ATA C -3'), C chain (5'- TCA ACT GCC TGG TGA TAA AAC GAC ACT ACGTGG GAA TCT ACT ATG GCG GCT CTT C -3'), D chain (5'- TTC AGA CTT AGG AAT GTG CTT CCC ACG TAG TGT CGT TTG TAT TGG ACC CTC GCA T -3') with TM buffer (20mM, Tris, 50mM MgCl 2 , pH 8.0), after mixing thoroughly, heat at 95°C for 2min, then rapidly cool down to 4°C within 30s. The prepared DNA tetrahedron was recovered and verified by PAGE electrophoresis and AFM.
Embodiment 2
[0019] Equivalent amount of chain A ( 5’- GTG AAAAA AAAAA GCA -ACA TTC CTA AGT CTG AAA CAT TAC AGC TTG CTA CAC GAG AAG AGC CGC CAT AGT A-3'), B strand (5'-HS-C6- TAT CAC CAG GCA GTT GAC AGT GTA GCA AGC TGT AAT AGA TGC GAG GGT CCA ATA C -3'), C strand (5'-HS-C6- TCA ACT GCC TGG TGA TAA AAC GAC ACT ACGTGG GAA TCT ACT ATG GCG GCT CTT C -3'), D strand (5 '-HS-C6- TTC AGA CTT AGG AAT GTG CTT CCC ACG TAG TGT CGT TTG TAT TGG ACC CTC GCA T -3') with TM buffer (20mM, Tris, 50mM MgCl 2 , pH 8.0), after mixing thoroughly, heat at 95°C for 2min, then rapidly cool down to 4°C within 30s. The prepared DNA tetrahedron was recovered and characterized by PAGE electrophoresis and AFM.
[0020] Add 20 μL (10 μM) DNA tetrahedron structure to 1mL 15nm gold colloid solution, shake at room temperature overnight, add 100mM PB buffer (pH7.4), the final concentration is 10mM, add aging solution (10 mM PB, 2M NaCl, pH 7.4) The final concentration of salt in the solution was 0.15M. After overnight a...
Embodiment 3
[0022] Equivalent amount of chain A ( 5’- GTG AAAAA AAAAA GCA -ACA TTC CTA AGT CTG AAA CAT TAC AGC TTG CTA CAC GAG AAG AGC CGC CAT AGT A-3'), B strand (5'-NH 2 -C6- TAT CAC CAG GCA GTT GAC AGT GTA GCA AGC TGT AAT AGA TGC GAG GGT CCA ATA C -3'), C strand (5'-NH 2 -C6- TCA ACT GCC TGG TGA TAA AAC GAC ACT ACGTGG GAA TCT ACT ATG GCG GCT CTT C -3'), D strand (5'-NH 2 -C6- TTC AGA CTT AGG AAT GTG CTT CCC ACG TAG TGT CGT TTG TAT TGG ACC CTC GCA T -3') with TM buffer (20mM, Tris, 50mM MgCl 2 , pH 8.0), after mixing thoroughly, heat at 95°C for 2min, then rapidly cool down to 4°C within 30s. The prepared DNA tetrahedron was recovered and characterized by PAGE and AFM. 20 μL (10 μM) DNA tetrahedron structure in 10 μL magnetic bead solution (1 mM), shake overnight at 37°C and place on a magnetic rack, magnetic suspension, discard the supernatant (unconnected DNA tetrahedron), add 100 μL pH7.4 PB (10 mM, 0.15 M NaCl) three times. Add 20 μL PB buffer solution to the precipitate to re...
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