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Prostate related cancer gene information collection and analysis method

A technology for information collection, prostate cancer, applied in the field of bioinformatics data processing

Active Publication Date: 2016-01-13
PEKING UNION MEDICAL COLLEGE HOSPITAL CHINESE ACAD OF MEDICAL SCI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

High-throughput technology provides a more comprehensive and rapid analysis method for the study of disease pathogenesis. Therefore, a large number of scholars use gene chips or high-throughput sequencing technology to study the mRNA and miRNA transcriptome of prostate cancer. However, each researcher Or the laboratory can only complete the sequencing analysis of small samples due to limited materials or funds. However, in the process of cancer pathogenesis, cancer cells gain survival advantages, accumulate continuously, expand, infiltrate the surrounding tissue environment, and spread. The genetic structure of a series of genes changes, and the research on these changes requires the processing of large samples and big data to get more accurate

Method used

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  • Prostate related cancer gene information collection and analysis method
  • Prostate related cancer gene information collection and analysis method

Examples

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Embodiment 1

[0034] A prostate-related cancer gene information collection and analysis system (see figure 1 ), including a data acquisition module, a data analysis module and a data display module. The data acquisition module collects data and sends it to the data analysis module. The data analysis module processes and analyzes the data and displays it through the data display module. The data acquisition module includes DNA data acquisition module, RNA data acquisition module and protein data acquisition module.

Embodiment 2

[0036] A data collection module in a prostate-related cancer gene information collection and analysis system (see figure 2 ), including a DNA data collection module, an RNA data collection module and a protein data collection module, wherein the DNA data collection module includes a mutation site collection module, a methylation site collection module, and a SNP site collection module; the RNA data collection module includes mRNA expression collection module, miRNA expression collection module, lncRNA expression collection module; protein data collection module includes protein expression profile data collection module.

Embodiment 3

[0038] A data analysis module in a prostate-related cancer gene information collection and analysis system (see image 3 ), including a differentially expressed gene analysis module, a predicted target analysis module, a biological information network analysis module, a GO analysis module, and a pathway analysis module.

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Abstract

The invention relates to a prostate related cancer gene information collection and analysis method. The invention provides a prostate related cancer gene information collection and analysis system. Through collecting all the data related to the prostate cancer in the existing database, a bioinformatics method is utilized to carry out confluence analysis on the prostate cancer mRNA and miRNA high-throughput transcriptome data, and a prostate cancer diagnostic marker suitable for clinic application is obtained on the basis of large-sample big data processing.

Description

technical field [0001] The invention relates to the field of biological information data processing, in particular to a method for collecting and analyzing prostate-related cancer gene information. Background technique [0002] Prostate cancer is a common male urogenital tumor. So far, the mechanism of prostate cancer development is not clear. High-throughput technology provides a more comprehensive and rapid analysis method for the study of disease pathogenesis. Therefore, a large number of scholars use gene chips or high-throughput sequencing technology to study the mRNA and miRNA transcriptome of prostate cancer. However, each researcher Or the laboratory can only complete the sequencing analysis of small samples due to limited materials or funds. However, in the process of cancer pathogenesis, cancer cells gain survival advantages, accumulate continuously, expand, infiltrate the surrounding tissue environment, and spread. The genetic structure of a series of genes chan...

Claims

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Application Information

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IPC IPC(8): G06F19/16
Inventor 吴志宏
Owner PEKING UNION MEDICAL COLLEGE HOSPITAL CHINESE ACAD OF MEDICAL SCI
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